pathotypr/CITATION.cff at main · PathoGenOmics-Lab/pathotypr · GitHub

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cff-version: 1.2.0
message: "If you use Pathotypr, please cite it as below."
title: "Pathotypr: harmonised MTBC lineage assignment and resistance-associated variant detection for genomic surveillance"
type: software
authors:
  - family-names: Ruiz-Rodriguez
    given-names: Paula
    orcid: "https://orcid.org/0000-0003-0727-5974"
    affiliation: "Institute for Integrative Systems Biology (I2SysBio), CSIC - University of Valencia"
  - family-names: Coscollá
    given-names: Mireia
    orcid: "https://orcid.org/0000-0003-2078-1032"
    affiliation: "Institute for Integrative Systems Biology (I2SysBio), CSIC - University of Valencia"
version: 1.0.0
date-released: 2026-03-24
license: AGPL-3.0-only
repository-code: "https://github.com/PathoGenOmics-Lab/pathotypr"
url: "https://github.com/PathoGenOmics-Lab/pathotypr"
doi: "10.64898/2026.03.24.714002"
identifiers:
  - type: doi
    value: "10.64898/2026.03.24.714002"
    description: "bioRxiv preprint DOI"
preferred-citation:
  type: article
  title: "Pathotypr: harmonised MTBC lineage assignment and resistance-associated variant detection for genomic surveillance"
  authors:
    - family-names: Ruiz-Rodriguez
      given-names: Paula
      orcid: "https://orcid.org/0000-0003-0727-5974"
    - family-names: Coscollá
      given-names: Mireia
      orcid: "https://orcid.org/0000-0003-2078-1032"
  doi: "10.64898/2026.03.24.714002"
  url: "https://www.biorxiv.org/content/10.64898/2026.03.24.714002v1"
  year: 2026
  journal: "bioRxiv"
  status: "preprint"