enforce use of Enlish labels when possible for ontologies (+tests); remove CVS tags; fix mentions of Gemma; update copyright information for some files;

Author: ppavlidis

src/ubic/basecode/dataStructure/BitUtil.java

@@ -24,7 +24,7 @@ Licensed to the Apache Software Foundation (ASF) under one or more
  * Based on code from: Derby - Class org.apache.derbyTesting.unitTests.util.BitUtil
  * 
  * @author paul
- * @version $Id$
+ * 
  */
 public class BitUtil {
 

src/ubic/basecode/dataStructure/CountingMap.java

@@ -1,7 +1,7 @@
 /*
- * The Gemma project
+ * The basecode project
  * 
- * Copyright (c) 2008 University of British Columbia
+ * Copyright (c) 2008-2019 University of British Columbia
  * 
  * Licensed under the Apache License, Version 2.0 (the "License");
  * you may not use this file except in compliance with the License.
@@ -34,7 +34,7 @@
  * This replaces the idiom of map.containsKey(k) ? map.put(k, map.get(k) + 1) : map.put(k, 0);
  * 
  * @author luke
- * @version $Id$
+ * 
  * @param <K>
  */
 public class CountingMap<K> implements Map<K, Integer> {

src/ubic/basecode/dataStructure/DoubleAddingMap.java

@@ -7,7 +7,7 @@
  * Similar to ubic.gemma.util.CountingMap. Except instead it adds the values of the keys.
  * 
  * @author ?
- * @version $Id$
+ * 
  */
 public class DoubleAddingMap<K> extends HashMap<K, Double> {
 

src/ubic/basecode/dataStructure/DoublePoint.java

@@ -1,7 +1,7 @@
 /*
  * The baseCode project
  * 
- * Copyright (c) 2008 University of British Columbia
+ * Copyright (c) 2008-2019 University of British Columbia
  * 
  * Licensed under the Apache License, Version 2.0 (the "License");
  * you may not use this file except in compliance with the License.
@@ -20,7 +20,7 @@
 
 /**
  * @author klc
- * @version $Id$
+ * 
  */
 public class DoublePoint {
 

src/ubic/basecode/dataStructure/Link.java

@@ -25,7 +25,7 @@
  * is important for some applications).
  * 
  * @author Paul Pavlidis
- * @version $Id$
+ * 
  */
 public class Link extends Point implements Comparable<Link> {
 

src/ubic/basecode/dataStructure/Point.java

@@ -20,7 +20,7 @@
 
 /**
  * @author Paul Pavlidis
- * @version $Id$
+ * 
  */
 public class Point {
 

src/ubic/basecode/dataStructure/StringToStringSetMap.java

@@ -1,7 +1,7 @@
 /*
- * The Gemma project
+ * The basecode project
  * 
- * Copyright (c) 2007 University of British Columbia
+ * Copyright (c) 2007-2019 University of British Columbia
  * 
  * Licensed under the Apache License, Version 2.0 (the "License");
  * you may not use this file except in compliance with the License.
@@ -32,7 +32,7 @@
  * Implemented to store string based many to many relationships.
  * 
  * @author leon
- * @version $Id$
+ * 
  */
 public class StringToStringSetMap extends HashMap<String, Set<String>> {
 

src/ubic/basecode/dataStructure/Visitable.java

@@ -20,7 +20,7 @@
 
 /**
  * @author pavlidis
- * @version $Id$
+ * 
  */
 public abstract class Visitable {
 

src/ubic/basecode/dataStructure/graph/AbstractGraph.java

@@ -25,7 +25,7 @@
 
 /**
  * @author Paul Pavlidis
- * @version $Id$
+ * 
  */
 public abstract class AbstractGraph<R extends GraphNode<K, V>, K, V> implements Graph<R, K, V> {
 

src/ubic/basecode/dataStructure/graph/AbstractGraphNode.java

@@ -22,7 +22,7 @@
 
 /**
  * @author Paul Pavlidis
- * @version $Id$
+ * 
  */
 public abstract class AbstractGraphNode<K, V> extends Visitable implements GraphNode<K, V> {
     protected V item;