Merge branch 'release-1.0.28'

Author: Paul Pavlidis

pom.xml

@@ -5,7 +5,7 @@
 	<name>baseCode</name>
 	<groupId>baseCode</groupId>
 	<artifactId>baseCode</artifactId>
-	<version>1.0.27</version>
+	<version>1.0.28</version>
 	<inceptionYear>2003</inceptionYear>
 	<description>
 	<![CDATA[Data structures, math and statistics tools, and utilities that are often needed across projects.]]>

src/ontology.properties

@@ -25,12 +25,11 @@ url.seqOntology=http://purl.obolibrary.org/obo/so.owl
 url.unitsOntology=http://purl.obolibrary.org/obo/uo.owl
 # according to http://www.obofoundry.org/ontology/clo.html this "should" point to https://raw.githubusercontent.com/CLO-ontology/CLO/master/src/ontology/clo_merged.owl
 url.cellLineOntology=http://purl.obolibrary.org/obo/clo.owl
-# Uberon version without extensions: I think this is the right fil from purl
-#url.uberonOntology=http://ontologies.berkeleybop.org/uberon.owl
+# Uberon version without extensions: I think this is the right file from purl
 url.uberonOntology=http://purl.obolibrary.org/obo/uberon.owl
 
-# as recommended at https://www.ebi.ac.uk/efo/faq.html#efodownload
-url.efOntology=https://raw.githubusercontent.com/EBISPOT/efo/master/efo.owl
+# as recommended at https://www.ebi.ac.uk/efo/ (this has changed several times)
+url.efOntology=https://www.ebi.ac.uk/efo/efo.owl
 url.obiOntology=http://svn.code.sf.net/p/obi/code/releases/2016-10-11/obi.owl