1.1.5

This is a small patch release that add support for list in configuration values using , as a delimiter.

1.1.3

This release introduces checked exception for the ontology search and handling of missing values in ebayes implementation.

1.1.2

This patch release prevents transitive dependency on Log4j 1.2 through Jena which contains known security vulnerabilities.

You might still have to import Log4j 1.2 in your final project, and we suggest using the Log4j 1.2 compatibility API provided by Log4j 2 to that end:

<dependency>
  <groupId>org.apache.logging.log4j</groupId>
  <artifactId>log4j-1.2-api</artifactId>
  <version>${log4j2.version}</version>
</dependency>

1.1.1

Fix a NullPointerException in ontology term children URI which occurs for blank nodes.

1.1

This release was long overdue. I'm including here some of the work that was done since the 1.0.30.

• use fixed locale for number formatting (helps us a long way in standardizing this in PavlidisLab/Gemma#182)
• new counting strategy for nearly identical values that ignore NAs
• dependencies update and sync with Gemma