track_overlay argument does not print peak signals as a scale on y-axis

[kaanokay]

Hi,

Thank you for developing this R package which is so useful.

I noticed that once I overlapped peaks from different samples, figure was lack of scale on y-axis for peaks.

Is there any chance to fix this?

Kind regards.

[PoisonAlien]

Hi,

Thank you for the kind workds and I am glad you find it useful. Could you please post the command used?

[kaanokay]

Hi,

Thank you for your quick reply!

I'm using trackplot v1.6.0.

bigWig_files <- list.files(path = "/Downloads/H3K18ac.mark", pattern = ".bw$", full.names = TRUE)

sample_names <- c("H3K18ac.1", "H3K18ac.2", "H3K18ac.3")

track_cols = c("#1b9e77", "#7570b3", "#d95f02")

bigWigs = read_coldata(bws = bigWig_files, build = "hg19", sample_names = sample_names)

t = track_extract(colData = bigWigs, gene = "PHLDA1", query_ucsc = T)

track_plot(summary_list = t, show_ideogram = FALSE, track_overlay = T, col = track_cols, y_max = 300, y_min = 0)