rehab

Author: rossibarra

rehab.Rmd

@@ -31,16 +31,22 @@ And no, I won't tell you what R.E.H.A.B. stands for, so don't ask.
 
 <!-- [Strütt et al preprint](https://www.biorxiv.org/content/10.1101/2024.06.11.598434v1.full.pdf) A generalized structured coalescent for purifying selection without recombination -->
 
+## 2026
+### January
+#### Jan 23
+[James and Lascoux preprint](https://www.biorxiv.org/content/10.64898/2025.12.19.695387v1) The effect of genome organisation on selection efficiency in two contrasted plant species
+
+#### Jan 16
+[Amundson et al preprint](https://www.biorxiv.org/content/10.1101/2025.09.17.676453v1) A deep-time landscape of plant cis-regulatory sequence evolution
+
 ## 2025
 ### December
-#### December 17
-[Amundson et al](https://www.biorxiv.org/content/10.1101/2025.09.17.676453v1) A deep-time landscape of plant cis-regulatory sequence evolution
 
 #### December 12
 [Baril, Pucetti, and Croll](https://www.nature.com/articles/s41467-025-64944-4) Historic transposon mobilisation waves create distinct pools of adaptive variants in a major crop pathogen
 
 #### December 5
-[Braasch, Harenčár, Swope](https://www.authorea.com/doi/full/10.22541/au.175873518.81404075) Extremely fine-scale soil heterogeneity in a rare serpentine endemic plant shapes patterns of genetic diversity
+[Braasch, Harenčár, Swope preprint](https://www.authorea.com/doi/full/10.22541/au.175873518.81404075) Extremely fine-scale soil heterogeneity in a rare serpentine endemic plant shapes patterns of genetic diversity
 
 ### November
 #### November 28

rehab.html

@@ -315,16 +315,29 @@ <h1 class="title toc-ignore">R.E.H.A.B.</h1>
 ask.</p>
 <!-- [Strütt et al preprint](https://www.biorxiv.org/content/10.1101/2024.06.11.598434v1.full.pdf) A generalized structured coalescent for purifying selection without recombination -->
 <div id="section" class="section level2">
-<h2>2025</h2>
-<div id="december" class="section level3">
-<h3>December</h3>
-<div id="december-17" class="section level4">
-<h4>December 17</h4>
+<h2>2026</h2>
+<div id="january" class="section level3">
+<h3>January</h3>
+<div id="jan-23" class="section level4">
+<h4>Jan 23</h4>
+<p><a
+href="https://www.biorxiv.org/content/10.64898/2025.12.19.695387v1">James
+and Lascoux preprint</a> The effect of genome organisation on selection
+efficiency in two contrasted plant species</p>
+</div>
+<div id="jan-16" class="section level4">
+<h4>Jan 16</h4>
 <p><a
 href="https://www.biorxiv.org/content/10.1101/2025.09.17.676453v1">Amundson
-et al</a> A deep-time landscape of plant cis-regulatory sequence
-evolution</p>
+et al preprint</a> A deep-time landscape of plant cis-regulatory
+sequence evolution</p>
+</div>
+</div>
 </div>
+<div id="section-1" class="section level2">
+<h2>2025</h2>
+<div id="december" class="section level3">
+<h3>December</h3>
 <div id="december-12" class="section level4">
 <h4>December 12</h4>
 <p><a href="https://www.nature.com/articles/s41467-025-64944-4">Baril,
@@ -335,8 +348,8 @@ <h4>December 12</h4>
 <h4>December 5</h4>
 <p><a
 href="https://www.authorea.com/doi/full/10.22541/au.175873518.81404075">Braasch,
-Harenčár, Swope</a> Extremely fine-scale soil heterogeneity in a rare
-serpentine endemic plant shapes patterns of genetic diversity</p>
+Harenčár, Swope preprint</a> Extremely fine-scale soil heterogeneity in
+a rare serpentine endemic plant shapes patterns of genetic diversity</p>
 </div>
 </div>
 <div id="november" class="section level3">
@@ -626,7 +639,7 @@ <h4>Feb 7</h4>
 <p>Jeff is in Canada - skipped</p>
 </div>
 </div>
-<div id="january" class="section level3">
+<div id="january-1" class="section level3">
 <h3>January</h3>
 <div id="jan-31" class="section level4">
 <h4>Jan 31</h4>
@@ -655,7 +668,7 @@ <h4>Jan 3</h4>
 </div>
 </div>
 </div>
-<div id="section-1" class="section level2">
+<div id="section-2" class="section level2">
 <h2>2024</h2>
 <div id="december-1" class="section level3">
 <h3>December</h3>
@@ -960,7 +973,7 @@ <h4>Jan 5</h4>
 </div>
 </div>
 </div>
-<div id="section-2" class="section level2">
+<div id="section-3" class="section level2">
 <h2>2023</h2>
 <div id="december-2" class="section level3">
 <h3>December</h3>
@@ -1275,7 +1288,7 @@ <h4>Feb 3</h4>
 divergence of plant populations</p>
 </div>
 </div>
-<div id="january-1" class="section level3">
+<div id="january-2" class="section level3">
 <h3>January</h3>
 <div id="jan-27" class="section level4">
 <h4>Jan 27</h4>
@@ -1293,7 +1306,7 @@ <h4>Jan 20</h4>
 </div>
 </div>
 </div>
-<div id="section-3" class="section level2">
+<div id="section-4" class="section level2">
 <h2>2022</h2>
 <div id="november-3" class="section level3">
 <h3>November</h3>
@@ -1585,7 +1598,7 @@ <h4>Feb 4</h4>
 reticulata)</p>
 </div>
 </div>
-<div id="january-2" class="section level3">
+<div id="january-3" class="section level3">
 <h3>January</h3>
 <div id="jan-28" class="section level4">
 <h4>Jan 28</h4>
@@ -1616,7 +1629,7 @@ <h4>Jan 7</h4>
 </div>
 </div>
 </div>
-<div id="section-4" class="section level2">
+<div id="section-5" class="section level2">
 <h2>2021</h2>
 <div id="december-3" class="section level3">
 <h3>December</h3>
@@ -1941,7 +1954,7 @@ <h4>Friday Feb 5</h4>
 stickleback populations</p>
 </div>
 </div>
-<div id="january-3" class="section level3">
+<div id="january-4" class="section level3">
 <h3>January</h3>
 <div id="friday-jan-29" class="section level4">
 <h4>Friday Jan 29</h4>
@@ -1972,7 +1985,7 @@ <h4>Friday Jan 8</h4>
 </div>
 </div>
 </div>
-<div id="section-5" class="section level2">
+<div id="section-6" class="section level2">
 <h2>2020</h2>
 <div id="december-4" class="section level3">
 <h3>December</h3>
@@ -2314,7 +2327,7 @@ <h4>Friday Feb. 7</h4>
 “rare allele load” in <em>Mimulus guttatus</em></p>
 </div>
 </div>
-<div id="january-4" class="section level3">
+<div id="january-5" class="section level3">
 <h3>January</h3>
 <div id="friday-jan.-31" class="section level4">
 <h4>Friday Jan. 31</h4>
@@ -2351,7 +2364,7 @@ <h4>Friday Jan. 3</h4>
 </div>
 </div>
 </div>
-<div id="section-6" class="section level2">
+<div id="section-7" class="section level2">
 <h2>2019</h2>
 <div id="december-6" class="section level3">
 <h3>December</h3>
@@ -2684,7 +2697,7 @@ <h4>Friday Feb 1</h4>
 euchromatic genome</p>
 </div>
 </div>
-<div id="january-5" class="section level3">
+<div id="january-6" class="section level3">
 <h3>January</h3>
 <div id="friday-jan-25" class="section level4">
 <h4>Friday Jan 25</h4>
@@ -2716,7 +2729,7 @@ <h4>Friday Jan 4</h4>
 </div>
 </div>
 </div>
-<div id="section-7" class="section level2">
+<div id="section-8" class="section level2">
 <h2>2018</h2>
 <div id="december-7" class="section level3">
 <h3>December</h3>
@@ -3059,7 +3072,7 @@ <h5>Friday Feb. 2</h5>
 heritable components</p>
 </div>
 </div>
-<div id="january-6" class="section level3">
+<div id="january-7" class="section level3">
 <h3>January</h3>
 <div id="friday-jan.-26" class="section level5">
 <h5>Friday Jan. 26</h5>
@@ -3087,7 +3100,7 @@ <h5>Friday Jan. 5</h5>
 </div>
 </div>
 </div>
-<div id="section-8" class="section level2">
+<div id="section-9" class="section level2">
 <h2>2017</h2>
 <div id="december-8" class="section level3">
 <h3>December</h3>
@@ -3467,7 +3480,7 @@ <h5>Friday Jan 6</h5>
 </div>
 </div>
 </div>
-<div id="section-9" class="section level2">
+<div id="section-10" class="section level2">
 <h2>2016</h2>
 <div id="december-2016" class="section level3">
 <h3>December 2016</h3>
@@ -3851,7 +3864,7 @@ <h5>Fri. Jan 8 2016</h5>
 </div>
 </div>
 </div>
-<div id="section-10" class="section level2">
+<div id="section-11" class="section level2">
 <h2>2015</h2>
 <div id="december-2015" class="section level3">
 <h3>December 2015</h3>
@@ -4235,7 +4248,7 @@ <h5>Fri. Jan 2, 2015</h5>
 </div>
 </div>
 </div>
-<div id="section-11" class="section level2">
+<div id="section-12" class="section level2">
 <h2>2014</h2>
 <div id="december-2014" class="section level3">
 <h3>December 2014</h3>
@@ -4633,7 +4646,7 @@ <h5>Fri Jan. 3 2014 (AO)</h5>
 </div>
 </div>
 </div>
-<div id="section-12" class="section level2">
+<div id="section-13" class="section level2">
 <h2>2013</h2>
 <div id="december-2013" class="section level3">
 <h3>December 2013</h3>