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Skip epigenomics vignette on Windows: remote bigwig access unsupported #19

Skip epigenomics vignette on Windows: remote bigwig access unsupported

Skip epigenomics vignette on Windows: remote bigwig access unsupported #19

Triggered via push March 16, 2026 06:57
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Total duration 1h 18m 35s
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rworkflows.yml

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AxiosError: Request failed with status code 403
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[Workflow Telemetry] AxiosError
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macOS-latest (auto)
AxiosError: Request failed with status code 403
macOS-latest (auto)
[Workflow Telemetry] AxiosError
macOS-latest (auto)
[Workflow Telemetry] getStackedAreaGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"CPU Load (%)"},"timeTicks":{"unit":"auto"}},"areas":[{"label":"User Load","color":"#e41a1c99","points":[{"x":1773644274584,"y":22.394164103224572},{"x":1773644279581,"y":50.46979865771812},{"x":1773644284580,"y":46.21010638297872},{"x":1773644289579,"y":42.31027535258563},{"x":1773644294578,"y":39.34535738142952},{"x":1773644299580,"y":52.90969899665552},{"x":1773644304586,"y":41.00197758734344},{"x":1773644309579,"y":58.18181818181818},{"x":1773644314579,"y":57.51503006012024},{"x":1773644319578,"y":54.65505693235097},{"x":1773644324579,"y":64.93679308050565},{"x":1773644329589,"y":50.734312416555404},{"x":1773644334579,"y":32.8428093645485},{"x":1773644339580,"y":19.12350597609562},{"x":1773644344577,"y":30.42895442359249},{"x":1773644349579,"y":24.496644295302016},{"x":1773644354582,"y":43.62057448229793},{"x":1773644359580,"y":37.583444592790386},{"x":1773644364576,"y":22.84196547144754},{"x":1773644369579,"y":38.93745796906523},{"x":1773644374582,"y":21.977287909151634},{"x":1773644379579,"y":25.481088254810885},{"x":1773644384584,"y":26.98519515477793},{"x":1773644389580,"y":10.213618157543392},{"x":1773644394579,"y":12.533512064343164},{"x":1773644399581,"y":11.318242343541945},{"x":1773644404578,"y":15.020026702269693},{"x":1773644409578,"y":11.021505376344086},{"x":1773644414578,"y":13.002680965147453},{"x":1773644419580,"y":16.677567037279267},{"x":1773644424575,"y":14.42241968557758},{"x":1773644429578,"y":10.080106809078773},{"x":1773644434579,"y":11.887172599059772},{"x":1773644439582,"y":9.66022651565623},{"x":1773644444579,"y":8.768406961178044},{"x":1773644449579,"y":12.633689839572193},{"x":1773644454577,"y":9.692513368983956},{"x":1773644459578,"y":28.72270019854401},{"x":1773644464581,"y":26.466666666666665},{"x":1773644469581,"y":18.40659340659341},{"x":1773644474577,"y":19.986541049798117},{"x":1773644479578,"y":25.933469110658518},{"x":1773644484576,"y":41.4},{"x":1773644489581,"y":41.711229946524064},{"x":1773644494579,"y":49.86666666666667},{"x":1773644499579,"y":49.50033311125916},{"x":1773644504585,"y":49.46949602122016},{"x":1773644509579,"y":52.54010695187166},{"x":1773644514580,"y":44.47421299397187},{"x":1773644519607,"y":46.320630749014455},{"x":1773644524580,"y":22.02583276682529},{"x":1773644529578,"y":25.467914438502675},{"x":1773644534579,"y":25.46916890080429},{"x":1773644539581,"y":19.560878243512974},{"x":1773644544578,"y":19.864864864864863},{"x":1773644549579,"y":20.147255689424366},{"x":1773644554581,"y":21.875},{"x":1773644559579,"y":26.99798522498321},{"x":1773644564577,"y":22.684563758389263},{"x":1773644569578,"y":15.003348961821835},{"x":1773644574578,"y":35.224274406332455},{"x":1773644579578,"y":30.311231393775373},{"x":1773644584578,"y":21.82910547396529},{"x":1773644589576,"y":44.17670682730924},{"x":1773644594579,"y":68.57142857142857},{"x":1773644599577,"y":65.82109479305741},{"x":1773644604580,"y":36.36363636363637},{"x":1773644609577,"y":63.34661354581673},{"x":1773644614578,"y":61.898395721925134},{"x":1773644619578,"y":63.951935914552735},{"x":1773644624578,"y":68.64181091877496},{"x":1773644629578,"y":62.64176117411607},{"x":1773644634578,"y":16.610850636302747},{"x":1773644639577,"y":30.35356904603069},{"x":1773644644578,"y":68.13333333333334},{"x":1773644649578,"y":51.703406813627254},{"x":1773644654579,"y":33.04347826086956},{"x":1773644659579,"y":10.201342281879194},{"x":1773644664579,"y":12.701612903225806},{"x":1773644669577,"y":9.798657718120806},{"x":1773644674579,"y":11.9543317662861},{"x":1773644679578,"y":8.926174496644295},{"x":1773644684578,"y":12.993971868720697},{"x":1773644689579,"y":14.49565798263193},{"x":1773644694580,"y":24.40159574468085},{"x":1773644699580,"y":21.759570181329753},{"x":1773644704586,"y":21.73913043478261},{"x":1773644709579,"y":17.86433848220282},{"x":1773644714578,"y":13.355704697986578},{"x":1773644719579,"y":14.882154882154882},{"x":1773644724578,"y":13.34674714956405},{"x":1773644729579,"y":15.0436534586
macOS-latest (auto)
AxiosError: Request failed with status code 403
macOS-latest (auto)
[Workflow Telemetry] AxiosError
macOS-latest (auto)
Process completed with exit code 1.
macOS-latest (auto)
R CMD check found ERRORs
macOS-latest (auto)
Vignette re-building failed.
macOS-latest (auto)
processing vignette 'cell_type_specific_epigenomics.Rmd' failed with diagnostics:
ubuntu-latest (auto)
Error: connect ECONNREFUSED 127.0.0.1:7777
ubuntu-latest (auto)
[Workflow Telemetry] Error
ubuntu-latest (auto)
[Workflow Telemetry] Unable to report stat collector result
ubuntu-latest (auto)
Error: connect ECONNREFUSED 127.0.0.1:7777
ubuntu-latest (auto)
[Workflow Telemetry] Error
ubuntu-latest (auto)
[Workflow Telemetry] Unable to finish stat collector
windows-latest (auto)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, catchpoint/workflow-telemetry-action@v2, r-lib/actions/setup-pandoc@v2, r-lib/actions/setup-r@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
windows-latest (auto)
replacing previous import 'utils::findMatches' by 'S4Vectors::findMatches' when loading 'SNPlocs.Hsapiens.dbSNP144.GRCh37'
windows-latest (auto)
replacing previous import 'utils::findMatches' by 'S4Vectors::findMatches' when loading 'SNPlocs.Hsapiens.dbSNP144.GRCh37'
windows-latest (auto)
replacing previous import 'utils::findMatches' by 'S4Vectors::findMatches' when loading 'SNPlocs.Hsapiens.dbSNP144.GRCh37'
windows-latest (auto)
replacing previous import 'utils::findMatches' by 'S4Vectors::findMatches' when loading 'SNPlocs.Hsapiens.dbSNP144.GRCh38'
windows-latest (auto)
replacing previous import 'utils::findMatches' by 'S4Vectors::findMatches' when loading 'SNPlocs.Hsapiens.dbSNP144.GRCh38'
windows-latest (auto)
replacing previous import 'utils::findMatches' by 'S4Vectors::findMatches' when loading 'SNPlocs.Hsapiens.dbSNP144.GRCh38'
windows-latest (auto)
file 'echoconda/configure' did not have execute permissions: corrected
windows-latest (auto)
dependencies 'BiocVersion', 'BiocStyle' are not available
macOS-latest (auto)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/upload-artifact@v4, catchpoint/workflow-telemetry-action@v2, r-lib/actions/setup-pandoc@v2, r-lib/actions/setup-r@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
macOS-latest (auto)
dependency ‘BiocVersion’ is not available
macOS-latest (auto)
fribidi 1.0.16 is already installed and up-to-date. To reinstall 1.0.16, run: brew reinstall fribidi
macOS-latest (auto)
harfbuzz 12.3.2 is already installed and up-to-date. To reinstall 12.3.2, run: brew reinstall harfbuzz
ubuntu-latest (auto)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, catchpoint/workflow-telemetry-action@v2, docker/build-push-action@v6, docker/login-action@v3, docker/setup-buildx-action@v3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

Artifacts

Produced during runtime
Name Size Digest
RajLabMSSM~echoannot~MOYHRY.dockerbuild
136 KB
sha256:188a2230d5239187829f41e8c6653859a9605c3d3950ed31ea758462c5ad533a
macOS-biocversion-release-r-auto-results
13 MB
sha256:e19da53a127c3a80ac208961d79f507ac583337881aa99ed3e1d1050a6992521