diffusion-deconvolution-dia-msms-data/dquartic_train_config.json at main · Roestlab/diffusion-deconvolution-dia-msms-data · GitHub

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{
    "data":{
        "parquet_directory": "data/",
        "ms2_data_path": null,
        "ms1_data_path": null,
        "normalize": "minmax"
    },
    "model":{
        "checkpoint_path": "best_model.ckpt",
        "num_epochs": 10000,
        "warmup_epochs": 5,
        "batch_size": 1,
        "learning_rate": 0.00001,
        "num_timesteps": 1000,
        "beta_schedule_type": "cosine",
        "pred_type": "eps",
        "auto_normalize": true,
        "ms1_loss_weight": 0.0,
        "use_model": "UNet1d",
        "CustomTransformer":{
            "input_dim": 40000,
            "hidden_dim": 1024,
            "num_heads": 8,
            "num_layers": 8
        },
        "UNet1d" : {
            "dim": 4,
            "channels": 1,
            "dim_mults": [1, 2, 2, 3, 3, 4, 4],
            "conditional": true,
            "init_cond_channels": 1,
            "attn_cond_channels": 1,
            "tfer_dim_mult": 620,
            "downsample_dim": 40000,
            "simple": true
        }
    },
    "wandb": {
        "use_wandb": true,
        "wandb_project": "dquartic",
        "wandb_name": null,
        "wandb_id": null,
        "wandb_resume": null,
        "wandb_architecture": "DDIM(UNet1d)",
        "wandb_dataset": "MS2",
        "wandb_mode": "offline"
    },
    "threads": 4
}