CI fixes

Author: akutuva21

.github/workflows/ci.yml

@@ -41,7 +41,7 @@ jobs:
     - name: Install dependencies
       run: |
         if [ "$RUNNER_OS" == "Linux" ]; then
-              sudo apt-get -y install libncurses5-dev libncursesw5-dev libncurses5
+          sudo apt-get update && sudo apt-get -y install libncurses-dev
         fi
         python -m pip install --upgrade pip
         pip install -r requirements-dev.txt
@@ -73,7 +73,7 @@ jobs:
         uses: docker/login-action@v2
         with:
           registry: ghcr.io
-          username: ${{ secrets.GHCR_USER }}
+          username: ${{ github.actor }}
           password: ${{ secrets.GITHUB_TOKEN }}
 
       - name: Extract metadata (tags, labels) for Docker

Dockerfile

@@ -6,9 +6,7 @@ LABEL org.opencontainers.image.source=https://github.com/RuleWorld/PyBioNetGen
 LABEL org.opencontainers.image.description="PyBNG container"
 LABEL org.opencontainers.image.licenses=MIT
 RUN apt-get update && apt-get install -y \
-  libncurses5-dev \
-  libncursesw5-dev \
-  libncurses5
+  libncurses-dev
 WORKDIR /src
 COPY . /src
 RUN pip install --no-cache-dir -r requirements.txt 

bionetgen/main.py

@@ -18,7 +18,7 @@
 
 # require version argparse action
 import argparse, sys
-from pkg_resources import packaging
+from packaging import version as packaging_version
 
 
 class requireAction(argparse.Action):
@@ -30,9 +30,9 @@ def __init__(self, option_strings, dest, nargs=None, **kwargs):
     def __call__(self, parser, namespace, values, option_string=None):
         setattr(namespace, self.dest, values)
         if values is not None:
-            req_version = packaging.version.parse(values)
+            req_version = packaging_version.parse(values)
             cver = bng.core.version.get_version()
-            cur_version = packaging.version.parse(cver)
+            cur_version = packaging_version.parse(cver)
             # if we don't meet requirement, warn user
             sys.tracebacklimit = 0
             if not (cur_version >= req_version):

requirements.txt

@@ -13,4 +13,5 @@ networkx
 python-libsbml
 pylru
 pyparsing
-pyyed
+packaging
+pyyed

setup.py

@@ -199,5 +199,6 @@ def get_folder (arch):
         "python-libsbml",
         "pylru",
         "pyparsing",
+        "packaging",
     ],
 )