re-str to py3 package

Author: Runsheng

.gitignore

@@ -1,5 +1,3 @@
-test/
-
 # pycharm
 .idea/
 .idea

Aim_and_scope.md primerdiffer/Aim_and_scope.mdAim_and_scope.md renamed to primerdiffer/Aim_and_scope.md

@@ -0,0 +1 @@
+__version__= "0.1.0"

primerdiffer/__init__.py

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+# primerdiffer: batch design primers for chromosomal level genotyping 
+
+## Installation:
+python package:
+primer3-py
+
+other program in your $PATH:
+ncbi-blast
+
+example code to install the packages using python3
+```bash
+pip install primer3-py # install primer3-py
+conda install -c bioconda blast # install ncbi blast
+```
+
+## Case example:
+Design genome-wide specific primers for two species/sub-species/divergent sequences:
+- Greedy design primers for a region in genome1 and make a specifiy check using genome2
+- The dis-similarity between genome1 and genome2 >5%. 
+
+Use C. nigoni and C.briggsae genome as example:
+
+
+
+
+
+    

general_settings.py primerdiffer/general_settings.pygeneral_settings.py renamed to primerdiffer/general_settings.py

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+from setuptools import setup
+from primerdiffer import __version__
+
+setup(
+    name='primerdiffer',
+    version=__version__,
+    packages=[''],
+    url='https://github.com/Runsheng/primerdiffer',
+    license='GPL-2',
+    author='runsheng',
+    author_email='runsheng.lee@gmail.com',
+    description='batch design of primers for genotyping',
+    install_requires = ["primer3-py>=0.6.1"
+                        ],
+    scripts = ['primerdiffer/primerdesign.py'
+                ]
+)