DO-MS not loading files

[StephenHol]

Describe the bug
Hello, Thank you so much for the amazing software. I have recently updated to DO-MS version 2.0.8 and I have encountered an issue with loading the data on windows computers. I add in the file pathway and when i click the load data button nothing happens. I don't see any form of errors pop up. the only thing i get is a note saying no traceback available.

Thank you,

[tower1ight]

Hi, im seeing the same issue on mac, were you able to get it working?

[StephenHol]

Hi, I have got it working but not with the most recent version of R. I had to go back to an earlier version of R. So I have 'R' version 4.2.0 and Rstudio version 2023.03.0+386.pro1 . I seem to be able to run the latest version of DO-MS with that.

[tower1ight]

Hmmm, I reverted to that version but I'm still having an issue. Pandoc doesn't seem to be function in markdown so that could be contributing.

[edemmott]

Same issue, at least on mac.

[edemmott]

Update - issue appears restricted to the Shiny interface. Using the command line version works and generates a report.

[edemmott]

Issues under: > sessionInfo()
R version 4.4.1 (2024-06-14)
Platform: aarch64-apple-darwin20
Running under: macOS Sonoma 14.5

Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRlapack.dylib; LAPACK version 3.12.0

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

time zone: Europe/London
tzcode source: internal

attached base packages:
[1] stats graphics grDevices utils datasets methods base

other attached packages:
[1] htmltools_0.5.8.1 viridis_0.6.5 MASS_7.3-61 ggpubr_0.6.0 viridisLite_0.4.2
[6] yaml_2.3.10 stringr_1.5.1 DT_0.33 rmarkdown_2.28 readr_2.1.5
[11] reshape2_1.4.4 tibble_3.2.1 knitr_1.48 lattice_0.22-6 ggplot2_3.5.1
[16] tidyr_1.3.1 dplyr_1.1.4 shinydashboard_0.7.2 shinyWidgets_0.8.6 pacman_0.5.1
[21] shiny_1.9.1

loaded via a namespace (and not attached):
[1] gtable_0.3.5 xfun_0.47 bslib_0.8.0 htmlwidgets_1.6.4 rstatix_0.7.2 tzdb_0.4.0
[7] crosstalk_1.2.1 vctrs_0.6.5 tools_4.4.1 generics_0.1.3 parallel_4.4.1 fansi_1.0.6
[13] pkgconfig_2.0.3 lifecycle_1.0.4 compiler_4.4.1 textshaping_0.4.0 munsell_0.5.1 fontawesome_0.5.2
[19] carData_3.0-5 httpuv_1.6.15 sass_0.4.9 crayon_1.5.3 later_1.3.2 pillar_1.9.0
[25] car_3.1-2 jquerylib_0.1.4 cachem_1.1.0 abind_1.4-8 mime_0.12 tidyselect_1.2.1
[31] digest_0.6.37 stringi_1.8.4 purrr_1.0.2 fastmap_1.2.0 grid_4.4.1 colorspace_2.1-1
[37] cli_3.6.3 magrittr_2.0.3 utf8_1.2.4 broom_1.0.6 withr_3.0.1 scales_1.3.0
[43] promises_1.3.0 backports_1.5.0 bit64_4.0.5 bit_4.0.5 gridExtra_2.3 ggsignif_0.6.4
[49] ragg_1.3.3 hms_1.1.3 memoise_2.0.1 evaluate_0.24.0 rlang_1.1.4 Rcpp_1.0.13
[55] xtable_1.8-4 glue_1.7.0 vroom_1.6.5 rstudioapi_0.16.0 jsonlite_1.8.8 R6_2.5.1
[61] plyr_1.8.9 systemfonts_1.1.0

[janagel]

Hi, just wondering if anyone has found a fix for this? My DO-MS stopped loading files after I updated the shiny version :-/ I have uninstalled both R and Rstudio, re-installed and still no files will load....

[edemmott]

While waiting to see if the pull request is approved. I found a fix for this (one line change in ui/import_tab.R) - accessible from my forked version of the repository - https://github.com/emmottlab/DO-MS

[edemmott]

Fix has now been merged, so this issue can be marked closed.