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cleanup: CLI simplify pass, correctness fixes, core dedups, scan split, docs sync (−587 net lines) #356

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Run time

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Job	Run time
test-release	20m 26s
clippy	30s
lint-ecosystems	6s
test (ubuntu-latest)	4m 56s
e2e-docker (pypi)	4m 36s
coverage	3m 54s
e2e-docker (cargo)	4m 41s
setup-matrix (cargo)	3m 11s
e2e-docker (deno)	4m 24s
e2e-docker (npm)	4m 50s
coverage-docker (deno)	5m 18s
dispatch-tests	10s
e2e-docker (composer)	4m 40s
setup-matrix (gem)	3m 20s
setup-matrix (maven)	4m 59s
e2e-docker (maven)	4m 20s
setup-matrix (golang)	2m 27s
test (windows-latest)	12m 5s
setup-matrix (deno)	3m 11s
coverage-docker (composer)	5m 32s
setup-matrix (pypi)	4m 38s
setup-matrix (nuget)	3m 29s
test (macos-latest)	6m 48s
setup-matrix (composer)	3m 14s
e2e-docker (gem)	4m 41s
e2e-docker (nuget)	4m 24s
e2e-docker (golang)	4m 27s
setup-matrix (npm)	4m 2s
coverage-docker (golang)	5m 23s
coverage-docker (cargo)	5m 29s
coverage-docker (gem)	5m 27s
coverage-docker (pypi)	5m 36s
coverage-docker (maven)	6m 4s
coverage-docker (npm)	5m 29s
coverage-docker (nuget)	5m 48s
coverage-merge	-1s
e2e	0s
	2h 52m 34s