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cleanup: CLI simplify pass, correctness fixes, core dedups, scan split, docs sync (−587 net lines) #359

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Run time

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Job	Run time
lint-ecosystems	7s
dispatch-tests	12s
clippy	26s
test-release	26m 32s
coverage	11m 0s
setup-matrix (gem)	3m 15s
e2e-docker (gem)	4m 23s
e2e-docker (cargo)	9m 58s
e2e-docker (deno)	4m 24s
setup-matrix (maven)	5m 31s
e2e-docker (pypi)	5m 13s
setup-matrix (composer)	2m 59s
setup-matrix (pypi)	7m 3s
setup-matrix (npm)	4m 8s
setup-matrix (nuget)	3m 43s
e2e-docker (maven)	4m 15s
test (windows-latest)	12m 26s
e2e-docker (golang)	5m 38s
e2e-docker (nuget)	4m 23s
setup-matrix (cargo)	3m 25s
setup-matrix (golang)	2m 57s
test (macos-latest)	11m 13s
coverage-docker (nuget)	5m 41s
test (ubuntu-latest)	12m 46s
setup-matrix (deno)	3m 8s
coverage-docker (cargo)	5m 32s
coverage-docker (gem)	5m 27s
coverage-docker (composer)	5m 19s
e2e-docker (composer)	3m 22s
coverage-docker (golang)	5m 15s
coverage-docker (maven)	6m 8s
coverage-docker (pypi)	5m 30s
coverage-docker (deno)	5m 44s
e2e-docker (npm)	4m 27s
coverage-docker (npm)	5m 39s
coverage-merge	21s
e2e	-1s
	3h 27m 29s