Statial/DESCRIPTION at devel · SydneyBioX/Statial · GitHub

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Package: Statial
Type: Package
Title: A package to identify changes in cell state relative to spatial associations
Version: 1.11.6
Date: 2022-09-19
Authors@R: c(person("Farhan", "Ameen", email = "fame2827@uni.sydney.edu.au",
    role = c("aut", "cre")),
    person("Sourish", "Iyengar", email = "sourish.iyengar@sydney.edu.au",
    role = c("aut")),
    person("Alex", "Qin", email = "alex.qin@sydney.edu.au",
    role = c("aut")),
    person("Shila", "Ghazanfar", email = "shila.ghazanfar@sydney.edu.au",
    role = c("aut")),
    person("Ellis", "Patrick", email = "ellis.patrick@sydney.edu.au",
    role = c("aut")))
VignetteBuilder: knitr
Encoding: UTF-8
biocViews: SingleCell, Spatial, Classification
Depends: R (>= 4.1.0)
Imports:
    BiocParallel,
    spatstat.geom,
    concaveman,
    data.table,
    spatstat.explore,
    dplyr,
    tidyr,
    SingleCellExperiment,
    tibble,
    stringr,
    tidyselect,
    ggplot2,
    methods,
    stats,
    SummarizedExperiment,
    S4Vectors,
    plotly,
    purrr,
    ranger,
    magrittr,
    limma,
    SpatialExperiment,
    cluster,
    treekoR,
    edgeR
Suggests:
    BiocStyle,
    knitr,
    testthat (>= 3.0.0),
    ClassifyR,
    spicyR,
    ggsurvfit,
    lisaClust,
    survival
Description: Statial is a suite of functions for identifying changes in cell
    state. The functionality provided by Statial provides robust quantification
    of cell type localisation which are invariant to changes in tissue
    structure. In addition to this Statial uncovers changes in marker expression
    associated with varying levels of localisation. These features can be used
    to explore how the structure and function of different cell types may be
    altered by the agents they are surrounded with.
License: GPL-3
RoxygenNote: 7.3.3
Config/testthat/edition: 3
URL: https://sydneybiox.github.io/Statial https://github.com/SydneyBioX/Statial/issues, https://sydneybiox.github.io/Statial/
BugReports: https://github.com/SydneyBioX/Statial/issues