diff --git a/.gitattributes b/.gitattributes
new file mode 100644
index 000000000..6bc51e105
--- /dev/null
+++ b/.gitattributes
@@ -0,0 +1,2 @@
+# SCM syntax highlighting & preventing 3-way merges
+uv.lock merge=binary linguist-language=TOML linguist-generated=true -diff
\ No newline at end of file
diff --git a/.github/actions/setup-uv/action.yml b/.github/actions/setup-uv/action.yml
new file mode 100644
index 000000000..309716e3d
--- /dev/null
+++ b/.github/actions/setup-uv/action.yml
@@ -0,0 +1,17 @@
+name: Set up uv
+description: Install the pinned version of uv and cache its package cache
+
+runs:
+  using: composite
+  steps:
+    - name: Install uv
+      shell: bash
+      run: pip install -r .github/uv-requirements.txt
+
+    - name: Cache uv packages
+      uses: actions/cache@v4
+      with:
+        path: ~/.cache/uv
+        key: uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
+        restore-keys: |
+          uv-${{ runner.os }}-
\ No newline at end of file
diff --git a/.github/dependabot.yml b/.github/dependabot.yml
index e1469ca79..3123cf4db 100644
--- a/.github/dependabot.yml
+++ b/.github/dependabot.yml
@@ -1,6 +1,6 @@
 version: 2
 updates:
-  - package-ecosystem: "pip"
+  - package-ecosystem: "uv"
     directory: "/"
     schedule:
       interval: weekly
@@ -8,6 +8,10 @@ updates:
       python-packages:
         patterns:
           - "*"
+  - package-ecosystem: "pip"
+    directory: "/.github"
+    schedule:
+      interval: "weekly"
     ignore:
       - dependency-name: "qiskit"
         # There is a bug with Mypy and Qiskit 2.4.0
diff --git a/.github/uv-requirements.txt b/.github/uv-requirements.txt
new file mode 100644
index 000000000..eebee3fd9
--- /dev/null
+++ b/.github/uv-requirements.txt
@@ -0,0 +1 @@
+uv==0.11.3
\ No newline at end of file
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 5419023ad..71142c74d 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -25,16 +25,11 @@ jobs:
     steps:
       - uses: actions/checkout@v5
         with:
-          fetch-depth: 0  # Fetch all, necessary to find tags and branches
+          fetch-depth: 0 # Fetch all, necessary to find tags and branches
           fetch-tags: true
 
-      - uses: actions/setup-python@v5
-        with:
-          python-version: ${{ matrix.python }}
-
-      - run: python -m pip install --upgrade pip
-
-      - name: Setup nox
-        run: pip install -c requirements-dev.txt nox
+      - name: Setup uv
+        uses: ./.github/actions/setup-uv
 
-      - run: nox --python ${{ matrix.python }}
+      - name: Run nox
+        run: uv run --extra dev nox -db uv --python ${{ matrix.python }}
diff --git a/.github/workflows/cov.yml b/.github/workflows/cov.yml
index e999e6b9d..22b08f6ee 100644
--- a/.github/workflows/cov.yml
+++ b/.github/workflows/cov.yml
@@ -1,6 +1,5 @@
 name: pytest-cov
 
-# Need to include "push"
 on: [push, pull_request]
 
 permissions:
@@ -16,22 +15,17 @@ jobs:
     steps:
       - uses: actions/checkout@v5
         with:
-          fetch-depth: 0  # Fetch all, necessary to find tags and branches
+          fetch-depth: 0 # Fetch all, necessary to find tags and branches
           fetch-tags: true
 
-      - name: Set up Python
-        uses: actions/setup-python@v5
+      - name: Setup uv
+        uses: ./.github/actions/setup-uv
         with:
+          enable-cache: true
           python-version: ${{ env.python-version }}
 
-      - name: Upgrade pip
-        run: python -m pip install --upgrade pip
-
-      - name: Install graphix with dev deps.
-        run: pip install .[dev,extra]
-
       - name: Run pytest
-        run: pytest --cov=./graphix --cov-report=xml --cov-report=term --doctest-modules
+        run: uv run --extra dev --extra extra pytest --cov=./graphix --cov-report=xml --cov-report=term --doctest-modules
 
       - name: Upload coverage reports to Codecov
         uses: codecov/codecov-action@v5
diff --git a/.github/workflows/doc.yml b/.github/workflows/doc.yml
index 725e7c1dc..b7816f4fe 100644
--- a/.github/workflows/doc.yml
+++ b/.github/workflows/doc.yml
@@ -22,44 +22,39 @@ jobs:
     steps:
       - uses: actions/checkout@v5
         with:
-          fetch-depth: 0  # Fetch all, necessary to find tags and branches
+          fetch-depth: 0 # Fetch all, necessary to find tags and branches
           fetch-tags: true
 
-      - uses: actions/setup-python@v5
+      - name: Setup uv
+        uses: ./.github/actions/setup-uv
         with:
+          enable-cache: true
           python-version: ${{ env.python-version }}
 
-      - name: Upgrade pip
-        run: python -m pip install --upgrade pip
-
-      - name: Install graphix
-        run: pip install -e ".[dev,doc]"
-
       - name: Make docs
-        run: sphinx-build -W docs/source docs/build -j auto
+        run: uv run --extra dev --extra doc sphinx-build -W docs/source docs/build -j auto
 
   lint-text:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v5
 
-      - uses: actions/setup-python@v5
+      - name: Setup uv
+        uses: ./.github/actions/setup-uv
         with:
-          python-version: ${{ env.python-version }}
+          enable-cache: true
 
       - name: Run language-agnostic linters
         run: |
-          pip install pre-commit
-
           # Non-fixable
-          pre-commit run -a check-case-conflict
-          pre-commit run -a check-yaml
+          uvx pre-commit run -a check-case-conflict
+          uvx pre-commit run -a check-yaml
 
           # Fixable
-          pre-commit run -a end-of-file-fixer || true
-          pre-commit run -a fix-byte-order-marker || true
-          pre-commit run -a mixed-line-ending || true
-          pre-commit run -a trailing-whitespace || true
+          uvx pre-commit run -a end-of-file-fixer || true
+          uvx pre-commit run -a fix-byte-order-marker || true
+          uvx pre-commit run -a mixed-line-ending || true
+          uvx pre-commit run -a trailing-whitespace || true
 
       - uses: actions/setup-node@v4
 
diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml
index 131142b8f..2aed9179e 100644
--- a/.github/workflows/release.yml
+++ b/.github/workflows/release.yml
@@ -15,8 +15,8 @@ jobs:
     permissions:
       id-token: write
     steps:
-      - uses: actions/checkout@v4
-      - uses: actions/setup-python@v5
+      - uses: actions/checkout@v5
+      - uses: actions/setup-python@v6
         with:
           python-version: ${{ env.python-version }}
       - name: Install pypa/build
diff --git a/.github/workflows/ruff.yml b/.github/workflows/ruff.yml
index 76cca0f00..d0b035c57 100644
--- a/.github/workflows/ruff.yml
+++ b/.github/workflows/ruff.yml
@@ -15,37 +15,30 @@ jobs:
   lint:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v4
-
-      - name: Cache pip dependencies
-        uses: actions/cache@v4
+      - uses: actions/checkout@v5
         with:
-          path: ~/.cache/pip
-          key: ${{ runner.os }}-pip-${{ hashFiles('requirements-dev.txt') }}
-          restore-keys: |
-            ${{ runner.os }}-pip-
+          fetch-depth: 0
 
-      - name: Install dependencies
-        run: python -m pip install --upgrade pip && python -m pip install ruff -c requirements-dev.txt
+      - name: Setup uv
+        uses: ./.github/actions/setup-uv
+        with:
+          enable-cache: true
+          cache-dependency-glob: "pyproject.toml"
 
       - name: Run Ruff Linter
-        run: ruff check --output-format=github
+        run: uv run --with ruff ruff check --output-format=github
 
   format:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v4
-
-      - name: Cache pip dependencies
-        uses: actions/cache@v4
+      - uses: actions/checkout@v5
         with:
-          path: ~/.cache/pip
-          key: ${{ runner.os }}-pip-${{ hashFiles('requirements-dev.txt') }}
-          restore-keys: |
-            ${{ runner.os }}-pip-
+          fetch-depth: 0
 
-      - name: Install dependencies
-        run: python -m pip install --upgrade pip && python -m pip install ruff -c requirements-dev.txt
+      - name: Setup uv
+        uses: ./.github/actions/setup-uv
+        with:
+          enable-cache: true
 
       - name: Run Ruff Formatter Check
-        run: ruff format --check
+        run: uv run --with ruff ruff format --check
diff --git a/.github/workflows/typecheck.yml b/.github/workflows/typecheck.yml
index 92f35a7ff..a40d377cd 100644
--- a/.github/workflows/typecheck.yml
+++ b/.github/workflows/typecheck.yml
@@ -23,21 +23,18 @@ jobs:
     steps:
       - uses: actions/checkout@v5
         with:
-          fetch-depth: 0  # Fetch all, necessary to find tags and branches
+          fetch-depth: 0 # Fetch all, necessary to find tags and branches
           fetch-tags: true
 
-      - uses: actions/setup-python@v5
+      - name: Setup uv
+        uses: ./.github/actions/setup-uv
         with:
+          enable-cache: true
           python-version: ${{ env.python-version }}
 
-      - run: |
-          python -m pip install --upgrade pip
-          pip install -e .[dev,extra,typing]
-          pip install --no-deps -e .[no-deps]
+      - run: uv run --extra dev --extra extra --extra typing mypy
 
-      - run: mypy
-
-      - run: pyright
+      - run: uv run --extra dev --extra extra --extra typing pyright
 
   # Check that `mypy` find installed `graphix` package (#328)
   #
@@ -54,20 +51,20 @@ jobs:
     steps:
       - uses: actions/checkout@v5
         with:
-          fetch-depth: 0  # Fetch all, necessary to find tags and branches
+          fetch-depth: 0 # Fetch all, necessary to find tags and branches
           fetch-tags: true
 
-      - uses: actions/setup-python@v5
+      - name: Setup uv
+        uses: ./.github/actions/setup-uv
         with:
+          enable-cache: true
           python-version: ${{ env.python-version }}
 
       - name: Install graphix and mypy
-        run: |
-          python -m pip install --upgrade pip
-          pip install .[dev]
+        run: uv sync --extra dev --no-editable
 
       - name: Test type-checking
         run: |
           cd ${{ runner.temp }}
           echo "from graphix import Pattern" > test_graphix_type.py
-          mypy test_graphix_type.py
+          uv run --project ${{ github.workspace }} --no-sync mypy test_graphix_type.py
\ No newline at end of file
diff --git a/.readthedocs.yaml b/.readthedocs.yaml
index e0a7fb9e4..ee8a5684f 100644
--- a/.readthedocs.yaml
+++ b/.readthedocs.yaml
@@ -6,7 +6,7 @@
 version: 2
 
 build:
-  os: ubuntu-20.04
+  os: ubuntu-24.04
   tools:
     python: "3.11"
 
@@ -15,6 +15,7 @@ sphinx:
 
 python:
   install:
-    - requirements: requirements-doc.txt
     - method: pip
       path: .
+      extra_requirements:
+        - doc
diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
index 8b2c56f53..c3637d607 100644
--- a/CONTRIBUTING.md
+++ b/CONTRIBUTING.md
@@ -9,48 +9,39 @@ The aim of `graphix` is to make the measurement-based quantum computing (MBQC) a
 ## Getting started working on your contribution for `graphix`
 
 We recommend to [fork the repository](https://docs.github.com/en/get-started/quickstart/fork-a-repo) before working on new features, whether that being an existing issue or your own idea.
-Once created, you'll need to clone the repository, and you can follow below to set up the environment. You may want to set up virtual environment, such as `conda env` or `pipenv` before setting up the environment.
+Once created, you'll need to clone the repository, and you can follow below to set up the environment. We recommend you use a project manager like `uv`, but you may prefer to manage your own virtual environment with `conda env` or `pipenv`.
 
 ```bash
 git clone git@github.com:<username>/graphix.git
 cd graphix
-pip install -e .[dev]
+pip install uv
+uv sync --extra dev --extra extra
 ```
 
-You may want to install additional packages.
-Specifically, `matplotlib` is necessary to run codes in the `example` folder.
+## Local checks
 
-```bash
-pip install matplotlib
-```
-
-For other depencencies for the docs build, see `docs/requirements.txt`.
-
-Before comitting the code, make sure to format with `ruff`.
-To format a python file, just run in the top level of the repository:
+To run individual checks:
 
 ```bash
-# Be sure to use the latest version of ruff
-pip install -U ruff
-# Sort imports and format
-ruff check --select I --fix .
-ruff format .
+uv run ruff check .
+uv run ruff format --check .
+uv run mypy
+uv run pyright
+uv run pytest
 ```
 
-### Local checks
-
-To replicate the CI pipeline locally, install `nox` and run the tests:
+You can also run the full CI test suite locally:
 
 ```bash
-pip install -c requirements-dev.txt nox
-nox
+uv run nox
 ```
 
-With the development dependencies installed, run the test suite explicitly:
+Before committing, format the code and check test coverage:
 
 ```bash
-pip install .[dev]
-pytest --cov=./graphix --cov-report=xml --cov-report=term
+uv run ruff check --fix .
+uv run ruff format .
+uv run pytest --cov=./graphix --cov-report=xml --cov-report=term --doctest-modules
 ```
 
 ### VS Code configuration
@@ -60,38 +51,35 @@ enable the linter and basic type checking on save:
 
 ```json
 {
-    "python.formatting.provider": "ruff",
+  "[python]": {
+    "editor.defaultFormatter": "charliermarsh.ruff",
     "editor.codeActionsOnSave": {
-        "source.organizeImports": true,
-        "source.fixAll": true
-    },
-    "python.analysis.typeCheckingMode": "basic"
+      "source.organizeImports.ruff": "explicit",
+      "source.fixAll.ruff": "explicit"
+    }
+  },
+  "python.analysis.typeCheckingMode": "basic"
 }
 ```
 
-and you are ready to commit the changes.
-
 ## Type-checking other Python projects that import `graphix` when installed as an editable package
 
-If `graphix` is installed with the command given above:
+If `graphix` is installed with `uv sync` or `pip install -e`, `mypy` may fail to type-check other Python projects that import `graphix`, showing the following error:
 
-```bash
-pip install -e .[dev]
+```
+error: Skipping analyzing "graphix": module is installed, but missing library stubs or py.typed marker  [import-untyped]
 ```
 
-Then `mypy` fails to type-check other Python projects that import `graphix`, showing the following error:
+To work around this, install `graphix` in strict editable mode:
 
-```
-error: Skipping analyzing "graphix": module is installed, but missing library stubs or py.typed marker  [import-untyped]
+```bash
+uv sync --config-setting editable_mode=strict
 ```
 
-Neither `mypy` nor `pyright` detect editable packages (installed with
-`pip install -e`), unless they are installed in `compat` or `strict`
-mode. A workaround is to install `graphix` in `strict` mode by running
-the following command in the `graphix` repository.
+Or similarly with pip:
 
 ```bash
-pip install -e . --config-settings editable_mode=strict
+pip install -e . --config-setting editable_mode=strict
 ```
 
 See https://github.com/pypa/setuptools/issues/3518 for more details.
diff --git a/README.md b/README.md
index 9983719e4..39603616d 100644
--- a/README.md
+++ b/README.md
@@ -28,12 +28,23 @@ Install `graphix` with `pip`:
 pip install graphix
 ```
 
-Install together with [extra packages](https://github.com/TeamGraphix/graphix/blob/master/requirements-extra.txt):
+Install with [extra dependencies](https://github.com/TeamGraphix/graphix/blob/master/pyproject.toml) (e.g. pyzx):
 
 ```bash
 pip install graphix[extra]
 ```
 
+### Editable installation using pip and uv
+
+As well as support for editable installation using pip, Graphix also supports using `uv`:
+
+```bash
+git clone https://github.com/TeamGraphix/graphix.git
+cd graphix
+uv sync --extra dev --extra extra
+```
+
+This creates a virtual environment and installs all development and extra dependencies from the `pyproject.toml` and `uv` lockfile.
 
 ## Using graphix
 
@@ -163,7 +174,7 @@ Graphix was founded in 2022 by Shinichi Sunami (University of Oxford) with assis
 </a>
 </p>
 
-Since 2023, Graphix team is joined by Qode group of the [QAT](https://qat.inria.fr/presentation/) team, co-hosted by [Inria](https://www.inria.fr/) and [ENS](https://www.ens.psl.eu/), who develops and maintains the library.
+Since 2023, Graphix team is joined by the Qode group of the [QAT](https://qat.inria.fr/presentation/) team, co-hosted by [Inria](https://www.inria.fr/) and [ENS](https://www.ens.psl.eu/), who develops and maintains the library.
 
 <p>
 <a href="https://www.inria.fr/" style="margin-right: 30px;">
diff --git a/docs/source/conf.py b/docs/source/conf.py
index ce84b6f5e..34c27f874 100644
--- a/docs/source/conf.py
+++ b/docs/source/conf.py
@@ -14,7 +14,7 @@
 # https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information
 
 project = "graphix"
-copyright = "2022, Team Graphix"
+copyright = "2022 -- 2026, Team Graphix"
 author = "Shinichi Sunami"
 
 # -- General configuration ---------------------------------------------------
diff --git a/docs/source/contributing.rst b/docs/source/contributing.rst
index a52830026..ba40ba7ba 100644
--- a/docs/source/contributing.rst
+++ b/docs/source/contributing.rst
@@ -3,24 +3,35 @@ Contributing to Graphix
 
 This page summarises useful tips for developing the project locally.
 
+Setup
+-----
+
+Clone the repository and install all development dependencies::
+
+    git clone https://github.com/TeamGraphix/graphix.git
+    cd graphix
+    pip install uv
+    uv sync --extra dev --extra extra
+
 Local checks
 ------------
 
-* Run ``nox -s tests`` to execute the test suite.  This mirrors what the
-  continuous integration service runs.
-* Format the code with :command:`ruff` before committing::
+Run the full CI suite locally::
+
+    uv run nox
 
-    ruff check --select I --fix .
-    ruff format .
+Or run individual checks::
 
-Additional commands from the CI configuration are useful for replicating
-the testing environment locally::
+    uv run ruff check .
+    uv run ruff format --check .
+    uv run mypy
+    uv run pytest
 
-    pip install -c requirements-dev.txt nox
-    nox --python 3.12
+Format code and check code coverage before committing::
 
-    pip install .[dev]
-    pytest --cov=./graphix --cov-report=xml --cov-report=term
+    uv run ruff check --select I --fix .
+    uv run ruff format .
+    uv run pytest --cov=./graphix --cov-report=xml --cov-report=term --doctest-modules
 
 VS Code configuration
 ---------------------
@@ -29,13 +40,15 @@ Using `VS Code <https://code.visualstudio.com/>`_ helps catch issues early.  A
 minimal ``.vscode/settings.json`` may look like::
 
     {
-        "python.formatting.provider": "ruff",
-        "editor.codeActionsOnSave": {
-            "source.organizeImports": true,
-            "source.fixAll": true
+        "[python]": {
+            "editor.defaultFormatter": "charliermarsh.ruff",
+            "editor.codeActionsOnSave": {
+                "source.organizeImports.ruff": "explicit",
+                "source.fixAll.ruff": "explicit"
+            }
         },
         "python.analysis.typeCheckingMode": "basic"
     }
 
 These settings enable the linter, format the code on save and turn on basic
-static type checking through the Pylance extension.
+static type checking through the Pylance extension.
\ No newline at end of file
diff --git a/graphix/instruction.py b/graphix/instruction.py
index d3cadab5f..91d5e1b11 100644
--- a/graphix/instruction.py
+++ b/graphix/instruction.py
@@ -78,15 +78,15 @@ class InstructionVisitor:
     - ``visit_axis``: rewrite axes.
     """
 
-    def visit_qubit(self, qubit: int) -> int:  # noqa: PLR6301
+    def visit_qubit(self, qubit: int) -> int:
         """Rewrite a qubit index."""
         return qubit
 
-    def visit_angle(self, angle: ParameterizedAngle) -> ParameterizedAngle:  # noqa: PLR6301
+    def visit_angle(self, angle: ParameterizedAngle) -> ParameterizedAngle:
         """Rewrite an angle."""
         return angle
 
-    def visit_axis(self, axis: Axis) -> Axis:  # noqa: PLR6301
+    def visit_axis(self, axis: Axis) -> Axis:
         """Rewrite an axis."""
         return axis
 
diff --git a/graphix/optimization.py b/graphix/optimization.py
index 992aeac84..86c75376f 100644
--- a/graphix/optimization.py
+++ b/graphix/optimization.py
@@ -199,12 +199,12 @@ def from_pattern(cls, pattern: Pattern) -> Self:
                         if new_cmd is None:
                             new_cmd = copy(cmd)
                         # The original domain should not be mutated
-                        new_cmd.t_domain = new_cmd.t_domain ^ t_domain_opt  # noqa: PLR6104
+                        new_cmd.t_domain = new_cmd.t_domain ^ t_domain_opt
                     if s_domain_opt := x_dict.pop(cmd.node, None):
                         if new_cmd is None:
                             new_cmd = copy(cmd)
                         # The original domain should not be mutated
-                        new_cmd.s_domain = new_cmd.s_domain ^ s_domain_opt  # noqa: PLR6104
+                        new_cmd.s_domain = new_cmd.s_domain ^ s_domain_opt
                     if new_cmd is None:
                         m_list.append(cmd)
                     else:
diff --git a/graphix/pyzx.py b/graphix/pyzx.py
index 5114550c1..2c9bed71f 100644
--- a/graphix/pyzx.py
+++ b/graphix/pyzx.py
@@ -124,7 +124,7 @@ def from_pyzx_graph(g: BaseGraph[int, tuple[int, int]]) -> OpenGraph[Measurement
     a qubit is measured, it will add two nodes behind it so that no output
     nodes are measured to satisfy the requirements of an open graph.
         .. warning::
-            works with `pyzx==0.8.0` (see `requirements-dev.txt`). Other versions may not be compatible due to breaking changes in `pyzx`
+            works with `pyzx==0.8.0` (see `pyproject.toml`). Other versions may not be compatible due to breaking changes in `pyzx`
     Example
     -------
     >>> import pyzx as zx
diff --git a/graphix/sim/base_backend.py b/graphix/sim/base_backend.py
index aee2d6c01..ef1977b3c 100644
--- a/graphix/sim/base_backend.py
+++ b/graphix/sim/base_backend.py
@@ -443,7 +443,7 @@ def swap(self, qubits: tuple[int, int]) -> None:
             (control, target) qubit indices
         """
 
-    def apply_noise(self, qubits: Sequence[int], noise: Noise) -> None:  # noqa: ARG002,PLR6301
+    def apply_noise(self, qubits: Sequence[int], noise: Noise) -> None:  # noqa: ARG002
         """Apply noise.
 
         The default implementation of this method raises
@@ -617,7 +617,7 @@ def add_nodes(self, nodes: Sequence[int], data: Data = BasicStates.PLUS) -> None
         Previously existing nodes remain unchanged.
         """
 
-    def apply_noise(self, cmd: ApplyNoise) -> None:  # noqa: ARG002,PLR6301
+    def apply_noise(self, cmd: ApplyNoise) -> None:  # noqa: ARG002
         """Apply noise.
 
         The default implementation of this method raises
diff --git a/noxfile.py b/noxfile.py
index f3e32ccac..3418a52db 100644
--- a/noxfile.py
+++ b/noxfile.py
@@ -15,11 +15,13 @@
 if TYPE_CHECKING:
     from collections.abc import Callable
 
+nox.options.default_venv_backend = "uv|virtualenv"
+
 PYTHON_VERSIONS = ["3.10", "3.11", "3.12", "3.13", "3.14"]
 
 
 def install_pytest(session: Session) -> None:
-    """Install pytest when requirements-dev.txt is not installed."""
+    """Install pytest when the dev extra is not installed."""
     session.install("pytest", "pytest-mock", "pytest-benchmark", "pytest-mpl", "psutil")
 
 
@@ -136,9 +138,9 @@ def tests_reverse_dependencies(session: Session, package: ReverseDependency) ->
     with TemporaryDirectory() as tmpdir:
         with session.cd(tmpdir):
             if package.branch is None:
-                session.run("git", "clone", package.repository)
+                session.run("git", "clone", package.repository, external=True)
             else:
-                session.run("git", "clone", "-b", package.branch, package.repository)
+                session.run("git", "clone", "-b", package.branch, package.repository, external=True)
             with session.cd(dirname):
                 session.install(package.install_target)
         # Note that `session.cd` is used as a context manager above,
@@ -148,7 +150,7 @@ def tests_reverse_dependencies(session: Session, package: ReverseDependency) ->
         # so that we run the test with the current graphix codebase,
         # even if another graphix version has been pinned in the
         # reverse dependendy.
-        session.install(".")
+        session.install(".[dev]")
         # Use `session.cd` as a context manager again to ensure that the
         # working directory is restored afterward. This is important
         # because Windows cannot delete a temporary directory while it
diff --git a/pyproject.toml b/pyproject.toml
index 359dbe5b1..484f080bd 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -24,24 +24,65 @@ classifiers = [
   "Topic :: Scientific/Engineering :: Physics",
 ]
 requires-python = ">=3.10,<3.15"
-dynamic = ["version", "dependencies", "optional-dependencies"]
+
+dependencies = [
+    "matplotlib",
+    "networkx",
+    "numpy>=2",
+    "quimb",
+    "scipy",
+    "sympy",
+    "typing_extensions",
+]
+
+dynamic = ["version"]
 
 [project.urls]
 Documentation = "https://graphix.readthedocs.io"
 "Bug Tracker" = "https://github.com/TeamGraphix/graphix/issues"
 
+[project.optional-dependencies]
+dev = [
+    "mypy==1.19.1",
+    "pre-commit",
+    "pyright",
+    "ruff==0.15.5",
+    "types-networkx==3.6.1.20260303",
+    "types-psutil",
+    "types-setuptools",
+    "scipy-stubs",
+    "nox==2026.2.9",
+    "psutil",
+    "pytest",
+    "pytest-benchmark",
+    "pytest-cov",
+    "pytest-mock",
+    "pytest-mpl",
+    "qiskit>=1.0",
+    "qiskit_qasm3_import",
+    "qiskit-aer",
+    "openqasm-parser>=3.1.0",
+    "graphix-qasm-parser>=0.1.1",
+]
+doc = [
+    "furo",
+    "joblib",
+    "matplotlib",
+    "sphinx",
+    "sphinx-gallery",
+]
+extra = [
+    "pyzx==0.9.0",
+]
+typing = [
+    "numpy==2.4.2; python_version >= '3.11'",
+    "numba==0.64.0; python_version >= '3.11'",
+    "numpy<2.4.2; python_version == '3.10'",
+]
+
 [tool.setuptools_scm]
 version_file = "graphix/_version.py"
 
-[tool.setuptools.dynamic]
-dependencies = { file = ["requirements.txt"] }
-
-[tool.setuptools.dynamic.optional-dependencies]
-dev = { file = ["requirements-dev.txt"] }
-extra = { file = ["requirements-extra.txt"] }
-doc = { file = ["requirements-doc.txt"] }
-typing = { file = ["requirements-typing.txt"] }
-
 [tool.setuptools.packages.find]
 include = ["graphix", "stubs"]
 
@@ -50,7 +91,7 @@ line-length = 120
 extend-exclude = ["docs"]
 
 [tool.ruff.lint]
-preview = true
+preview = false
 select = ["ALL"]
 extend-ignore = [
   "C90",     # Complexity
diff --git a/requirements-dev.txt b/requirements-dev.txt
deleted file mode 100644
index b33b83389..000000000
--- a/requirements-dev.txt
+++ /dev/null
@@ -1,32 +0,0 @@
-# Lint/format
-mypy==1.20.1
-pre-commit # for language-agnostic hooks
-pyright
-ruff==0.15.11
-
-# Stubs
-types-networkx==3.6.1.20260408
-types-psutil
-types-setuptools
-scipy-stubs
-
-# Tests
-# Keep in sync with CI
-nox==2026.4.10
-psutil
-pytest
-pytest-benchmark
-pytest-cov
-pytest-mock
-pytest-mpl
-
-# Optional dependencies
-
-# There is a bug with Mypy and Qiskit 2.4.0
-# See https://github.com/python/mypy/issues/21263
-qiskit>=1.0,<2.4
-qiskit_qasm3_import
-qiskit-aer
-
-openqasm-parser>=3.1.0
-graphix-qasm-parser>=0.1.1
diff --git a/requirements-doc.txt b/requirements-doc.txt
deleted file mode 100644
index 3c1f484ba..000000000
--- a/requirements-doc.txt
+++ /dev/null
@@ -1,5 +0,0 @@
-furo
-joblib  # For parallel builds
-matplotlib
-sphinx
-sphinx-gallery
diff --git a/requirements-extra.txt b/requirements-extra.txt
deleted file mode 100644
index 50b484843..000000000
--- a/requirements-extra.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-#graphix-ibmq
-#graphix-perceval
-pyzx==0.10.0
diff --git a/requirements-typing.txt b/requirements-typing.txt
deleted file mode 100644
index 220bab14c..000000000
--- a/requirements-typing.txt
+++ /dev/null
@@ -1,13 +0,0 @@
-# Pinning for typing
-
-# Packages listed in this file should also appear in
-# `requirements.txt`, `requirements-dev.txt`, or
-# `requirements-extra.txt`. They may be pinned here to specific
-# versions while remaining unpinned in the other files.
-
-# These pins define the version used for typing and do not need to be
-# supported with all Python versions supported by Graphix.
-
-# numpy and numba versions are sensitive and may cause typing issues
-numpy==2.4.2
-numba==0.65.0
diff --git a/requirements.txt b/requirements.txt
deleted file mode 100644
index 99c592fdd..000000000
--- a/requirements.txt
+++ /dev/null
@@ -1,8 +0,0 @@
-matplotlib
-networkx
-numpy>=2
-opt_einsum
-quimb
-scipy
-sympy
-typing_extensions
diff --git a/tests/test_fundamentals.py b/tests/test_fundamentals.py
index 48adbbc94..2460fad29 100644
--- a/tests/test_fundamentals.py
+++ b/tests/test_fundamentals.py
@@ -50,32 +50,32 @@ def test_mul_int(self) -> None:
     def test_mul_float(self) -> None:
         left = Sign.PLUS * 1.0
         assert isinstance(left, float)
-        assert left == float(Sign.PLUS)  # noqa: RUF069
+        assert left == float(Sign.PLUS)
         right = 1.0 * Sign.PLUS
         assert isinstance(right, float)
-        assert right == float(Sign.PLUS)  # noqa: RUF069
+        assert right == float(Sign.PLUS)
 
         left = Sign.MINUS * 1.0
         assert isinstance(left, float)
-        assert left == float(Sign.MINUS)  # noqa: RUF069
+        assert left == float(Sign.MINUS)
         right = 1.0 * Sign.MINUS
         assert isinstance(right, float)
-        assert right == float(Sign.MINUS)  # noqa: RUF069
+        assert right == float(Sign.MINUS)
 
     def test_mul_complex(self) -> None:
         left = Sign.PLUS * complex(1)
         assert isinstance(left, complex)
-        assert left == complex(Sign.PLUS)  # noqa: RUF069
+        assert left == complex(Sign.PLUS)
         right = complex(1) * Sign.PLUS
         assert isinstance(right, complex)
-        assert right == complex(Sign.PLUS)  # noqa: RUF069
+        assert right == complex(Sign.PLUS)
 
         left = Sign.MINUS * complex(1)
         assert isinstance(left, complex)
-        assert left == complex(Sign.MINUS)  # noqa: RUF069
+        assert left == complex(Sign.MINUS)
         right = complex(1) * Sign.MINUS
         assert isinstance(right, complex)
-        assert right == complex(Sign.MINUS)  # noqa: RUF069
+        assert right == complex(Sign.MINUS)
 
     def test_int(self) -> None:
         # Necessary to justify `type: ignore`
@@ -103,10 +103,10 @@ def test_properties(self, sign: Sign, is_imag: bool) -> None:
         assert ComplexUnit.from_properties(sign=sign, is_imag=is_imag).is_imag == is_imag
 
     def test_complex(self) -> None:
-        assert complex(ComplexUnit.ONE) == 1  # noqa: RUF069
-        assert complex(ComplexUnit.J) == 1j  # noqa: RUF069
-        assert complex(ComplexUnit.MINUS_ONE) == -1  # noqa: RUF069
-        assert complex(ComplexUnit.MINUS_J) == -1j  # noqa: RUF069
+        assert complex(ComplexUnit.ONE) == 1
+        assert complex(ComplexUnit.J) == 1j
+        assert complex(ComplexUnit.MINUS_ONE) == -1
+        assert complex(ComplexUnit.MINUS_J) == -1j
 
     def test_str(self) -> None:
         assert str(ComplexUnit.ONE) == "1"
@@ -116,15 +116,15 @@ def test_str(self) -> None:
 
     @pytest.mark.parametrize(("lhs", "rhs"), itertools.product(ComplexUnit, ComplexUnit))
     def test_mul_self(self, lhs: ComplexUnit, rhs: ComplexUnit) -> None:
-        assert complex(lhs * rhs) == complex(lhs) * complex(rhs)  # noqa: RUF069
+        assert complex(lhs * rhs) == complex(lhs) * complex(rhs)
 
     def test_mul_number(self) -> None:
         assert ComplexUnit.ONE * 1 == ComplexUnit.ONE
         assert 1 * ComplexUnit.ONE == ComplexUnit.ONE
-        assert ComplexUnit.ONE * 1.0 == ComplexUnit.ONE  # noqa: RUF069
-        assert 1.0 * ComplexUnit.ONE == ComplexUnit.ONE  # noqa: RUF069
-        assert ComplexUnit.ONE * complex(1) == ComplexUnit.ONE  # noqa: RUF069
-        assert complex(1) * ComplexUnit.ONE == ComplexUnit.ONE  # noqa: RUF069
+        assert ComplexUnit.ONE * 1.0 == ComplexUnit.ONE
+        assert 1.0 * ComplexUnit.ONE == ComplexUnit.ONE
+        assert ComplexUnit.ONE * complex(1) == ComplexUnit.ONE
+        assert complex(1) * ComplexUnit.ONE == ComplexUnit.ONE
 
     def test_neg(self) -> None:
         assert -ComplexUnit.ONE == ComplexUnit.MINUS_ONE
diff --git a/tests/test_parameter.py b/tests/test_parameter.py
index 1f2dfcf93..a9bf521d7 100644
--- a/tests/test_parameter.py
+++ b/tests/test_parameter.py
@@ -25,7 +25,7 @@ def test_pattern_affine_operations() -> None:
     assert alpha + 1 + 1 == alpha + 2
     assert alpha + alpha == 2 * alpha
     assert alpha - alpha == 0
-    assert alpha / 2 == 0.5 * alpha  # noqa: RUF069
+    assert alpha / 2 == 0.5 * alpha
     assert -alpha + alpha == 0
     beta = Placeholder("beta")
     with pytest.raises(PlaceholderOperationError):
diff --git a/tests/test_pauli.py b/tests/test_pauli.py
index 670690880..b867cef7a 100644
--- a/tests/test_pauli.py
+++ b/tests/test_pauli.py
@@ -71,21 +71,21 @@ def test_iterate_false(self) -> None:
         cmp = list(Pauli.iterate(symbol_only=False))
         assert len(cmp) == 16
         assert cmp[0] == Pauli.I
-        assert cmp[1] == 1j * Pauli.I  # noqa: RUF069
+        assert cmp[1] == 1j * Pauli.I
         assert cmp[2] == -1 * Pauli.I
-        assert cmp[3] == -1j * Pauli.I  # noqa: RUF069
+        assert cmp[3] == -1j * Pauli.I
         assert cmp[4] == Pauli.X
-        assert cmp[5] == 1j * Pauli.X  # noqa: RUF069
+        assert cmp[5] == 1j * Pauli.X
         assert cmp[6] == -1 * Pauli.X
-        assert cmp[7] == -1j * Pauli.X  # noqa: RUF069
+        assert cmp[7] == -1j * Pauli.X
         assert cmp[8] == Pauli.Y
-        assert cmp[9] == 1j * Pauli.Y  # noqa: RUF069
+        assert cmp[9] == 1j * Pauli.Y
         assert cmp[10] == -1 * Pauli.Y
-        assert cmp[11] == -1j * Pauli.Y  # noqa: RUF069
+        assert cmp[11] == -1j * Pauli.Y
         assert cmp[12] == Pauli.Z
-        assert cmp[13] == 1j * Pauli.Z  # noqa: RUF069
+        assert cmp[13] == 1j * Pauli.Z
         assert cmp[14] == -1 * Pauli.Z
-        assert cmp[15] == -1j * Pauli.Z  # noqa: RUF069
+        assert cmp[15] == -1j * Pauli.Z
 
     def test_iter_meta(self) -> None:
         it = Pauli.iterate(symbol_only=False)
diff --git a/uv.lock b/uv.lock
new file mode 100644
index 000000000..eac963b1e
--- /dev/null
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@@ -0,0 +1,3207 @@
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