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src/DAB_Analysis_Functions.py

Lines changed: 8 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -308,6 +308,13 @@ def chop_and_analyse_svs(
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flush=True,
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)
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shutil.rmtree(temp_folder)
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print(
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"Completed analysis; Time elapsed: {:.2f} minutes".format(
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(time.time() - start) / 60,
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),
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end="\r",
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flush=True,
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)
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return
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def im2double(self, img):
@@ -913,7 +920,7 @@ def analyse_DAB_and_cells(
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props_nuclei["axis_major_length"], props_nuclei["axis_minor_length"]
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)
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)
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table_nuclei = table_nuclei.with_columns(
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filename=np.full_like(
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table_nuclei["axis_minor_length"], filename, dtype="object"
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