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tasks.py
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211 lines (188 loc) · 8.1 KB
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import logging
import random
from typing import Dict, List
from warnings import warn
import numpy as np
import torch
import torch.nn as nn
import torch.nn.functional as F
from scipy.stats import kurtosis, skew
from torch.utils.data import DataLoader, Dataset
from complexity import SERIES_STATS
from data import generate_complex_regression_data, generate_fbm_sequence
from metrics import *
logger = logging.getLogger(__name__)
class TaskDataset(Dataset):
def __init__(self, inputs: np.ndarray, outputs: np.ndarray):
self.inputs = inputs
self.outputs = outputs
def __len__(self):
return len(self.inputs)
def __getitem__(self, i):
return self.inputs[i], self.outputs[i]
@property
def num_input_features(self):
return self.inputs[0].shape[-1]
@property
def num_output_features(self):
return self.inputs[0].shape[-1]
class Task:
@staticmethod
def random_init():
raise NotImplementedError()
@classmethod
def name(cls):
return cls.__name__.replace("tasks.", "")
def __init__(
self,
metrics: List[Metric],
num_samples: int,
train_ratio: float,
inputs: np.ndarray,
outputs: np.ndarray,
silent=False,
):
self.metrics = metrics
self.num_samples = num_samples
self.train_ratio = train_ratio
cut_index = int(num_samples * train_ratio)
self.train_data = TaskDataset(inputs[:cut_index,], outputs[:cut_index,])
self.valid_data = TaskDataset(inputs[cut_index:,], outputs[cut_index:,])
self.feature_functions.append(lambda _: self.num_samples)
self.feature_functions.append(lambda _: self.train_ratio)
self.feature_functions.append(lambda _: self.train_data.num_input_features)
self.feature_functions.append(lambda _: self.train_data.num_output_features)
# TODO: include metrics in task feature_functions for the task embedding to have access
if not silent:
logger.info(" Calculating Task Features")
self.features = []
if not silent:
logger.info(" Training Data Inputs")
self.features.append([np.mean(func(self.train_data.inputs)) for func in self.feature_functions])
if not silent:
logger.info(" Training Data Outputs")
self.features.append([np.mean(func(self.train_data.outputs)) for func in self.feature_functions])
if not silent:
logger.info(" Validation Data Inputs")
self.features.append([np.mean(func(self.valid_data.inputs)) for func in self.feature_functions])
if not silent:
logger.info(" Validation Data Outputs")
self.features.append([np.mean(func(self.valid_data.outputs)) for func in self.feature_functions])
self.check_partition_similarity()
def evaluate_metrics(self, model: nn.Module, dataset: TaskDataset) -> Dict[str, float]:
"""Return stacked metric tensors so autograd gradients flow to the model."""
metric_pairs = [
(m.name, m(model(torch.tensor(dataset.inputs, dtype=torch.float32)), dataset.outputs)) for m in self.metrics
]
metric_pairs.sort(key=lambda item: item[0])
tensors = [value for _, value in metric_pairs]
return torch.stack(tensors).to(dtype=torch.float32)
def check_partition_similarity(self):
train_in_feats, train_out_feats, valid_in_feats, valid_out_feats = self.features
cos_sim = F.cosine_similarity(torch.tensor(train_in_feats), torch.tensor(valid_in_feats), dim=0)
if cos_sim < 0.85:
warn(f"Cosine similarity of task data partitions' inputs low (cos={cos_sim:.3f})")
elif cos_sim == 1.0:
warn(f"Exact match for cosine similarity of task data partitions' inputs")
cos_sim = F.cosine_similarity(torch.tensor(train_out_feats), torch.tensor(valid_out_feats), dim=0)
if cos_sim < 0.85:
warn(f"Cosine similarity of task data partitions' outputs low (cos={cos_sim:.3f})")
elif cos_sim == 1.0:
warn(f"Exact match for cosine similarity of task data partitions' outputs")
class RegressionTask(Task):
@staticmethod
def random_init(num_samples=None, silent=False):
return RegressionTask(
true_dims=random.randint(1, 10),
observed_dims=random.randint(1, 10),
metrics=[MSELoss()],
num_samples=num_samples if num_samples is not None else random.randint(100, 1000),
train_ratio=max(0.5, min(random.random(), 0.7)),
silent=silent,
)
def __init__(
self, true_dims: int, observed_dims: int, metrics: List, num_samples: int, train_ratio: float, silent=False
):
self.true_dims = true_dims
self.observed_dims = observed_dims
inputs, outputs = generate_complex_regression_data(num_samples, true_dims, observed_dims)
self.feature_functions = [
lambda _: self.true_dims,
lambda _: self.observed_dims,
lambda samples: np.mean(samples, axis=0),
lambda samples: np.std(samples, axis=0),
lambda samples: np.min(samples, axis=0),
lambda samples: np.max(samples, axis=0),
lambda samples: np.median(samples, axis=0),
lambda samples: np.percentile(samples, 25),
lambda samples: np.percentile(samples, 75),
lambda samples: np.linalg.norm(samples, 1),
lambda samples: np.linalg.norm(samples, 2),
lambda samples: np.sum(np.abs(samples)),
skew,
kurtosis,
]
super().__init__(metrics, num_samples, train_ratio, inputs, outputs, silent)
class HurstTargetTimeSeriesTransformTask(Task):
@staticmethod
def random_init(num_samples=None, silent=False):
num_features = random.randint(1, 10)
return HurstTargetTimeSeriesTransformTask(
mean=np.random.randn(num_features) * 100,
stdev=np.random.randn(num_features) * 100 + 1,
hurst_target=random.random(),
fbm_length=random.random() * 10,
series_length=random.randint(100, 200),
num_features=num_features,
metrics=[MSELoss()],
num_samples=num_samples if num_samples is not None else random.randint(100, 500),
train_ratio=max(0.5, min(random.random(), 0.7)),
silent=silent,
)
def __init__(
self,
mean: float,
stdev: float,
hurst_target: float,
fbm_length: float,
series_length: int,
num_features: int,
metrics: List[Metric],
num_samples: int,
train_ratio: float,
silent=False,
):
self.mean = mean
self.stdev = stdev
self.hurst_target = hurst_target
self.series_length = series_length
self.fbm_length = fbm_length
self.num_features = num_features
sequences = [
generate_fbm_sequence(mean, stdev, hurst_target, fbm_length, num_features, series_length)
for _ in range(num_samples)
]
outputs = [
generate_fbm_sequence(mean, stdev, hurst_target, fbm_length, num_features, series_length)
for _ in range(num_samples)
]
self.feature_functions = [
*SERIES_STATS,
lambda _: self.mean,
lambda _: self.stdev,
lambda _: self.hurst_target,
lambda _: self.fbm_length,
lambda _: self.series_length,
lambda _: self.num_features,
]
super().__init__(metrics, num_samples, train_ratio, np.array(sequences), np.array(outputs), silent)
TASK_TYPE_TO_CLASS = {
RegressionTask.name(): RegressionTask,
# HurstTargetTimeSeriesTransformTask.name(): HurstTargetTimeSeriesTransformTask,
}
TASK_FEATURE_DIMS = {
n: 4 * len(c.random_init(num_samples=4, silent=True).feature_functions) for n, c in TASK_TYPE_TO_CLASS.items()
}
TASK_TYPE_TO_INDEX = {k: i for i, k in enumerate(TASK_FEATURE_DIMS.keys())}
TASK_INDEX_TO_TYPE = {i: k for k, i in TASK_TYPE_TO_INDEX.items()}
TASK_INDEX_TO_DIM = {TASK_TYPE_TO_INDEX[name]: dim for name, dim in TASK_FEATURE_DIMS.items()}