Adding last bit on GitHub Actions

Author: gvegayon

99-autoreport/README.md 15-autoreport/README.md99-autoreport/README.md renamed to 15-autoreport/README.md

@@ -97,6 +97,10 @@ covid
 
 ## Web scraping raw HTML: Example (cont 1.) {style="font-size: 80%"}
 
+::: {.callout-warning}
+The current version of the wikipedia document doesn't have the proper XPath. So we will skip the example and directly call the function to retrieve the table.
+:::
+
 - We want to get the HTML table in the doc. To do such, we can use the
   function `xml2::xml_find_all()` and `rvest::html_table()`
 
@@ -110,6 +114,8 @@ covid
 
 Live Example! (inspect elements in [Google Chrome](https://developers.google.com/web/tools/chrome-devtools/open),
 [Mozilla Firefox](https://developer.mozilla.org/en-US/docs/Tools/Page_Inspector/How_to/Open_the_Inspector), [Internet Explorer](https://docs.microsoft.com/en-us/microsoft-edge/devtools-guide-chromium/ie-mode), and [Safari](https://developer.apple.com/library/archive/documentation/NetworkingInternetWeb/Conceptual/Web_Inspector_Tutorial/EditingCode/EditingCode.html#//apple_ref/doc/uid/TP40017576-CH4-DontLinkElementID_25))
+
+
 
 ---
 
@@ -120,9 +126,8 @@ Now that we know what the path is, let's use that and extract
 ```{r}
 #| label: get-table-covid
 #| echo: true
-table <- xml_find_all(covid, xpath = '//*[@id="covid-19-pandemic-cases-and-mortality-by-country"]/div[5]/table')
-table <- html_table(table) # This returns a list of tables
-head(table[[1]])
+table <- html_table(covid)[[2]] # This returns a list of tables
+head(table)
 ```
 
 ---

99-autoreport/README.qmd 15-autoreport/README.qmd99-autoreport/README.qmd renamed to 15-autoreport/README.qmd

@@ -25,7 +25,7 @@ them.
 | 11/05 and 11/07 | More practice with slurm + [Homework 4](https://UofUEpiBio.github.io/PHS7045-advanced-programming/12-slurm-week2/12-slurm-hw.html) ([source](12-slurm-week2/12-slurm-hw.qmd)) | [slides](https://UofUEpiBio.github.io/PHS7045-advanced-programming/12-slurm-week2/slides.html) ([source](https://github.com/UofUEpiBio/PHS7045-advanced-programming//tree/main/12-slurm-week2/slides.qmd)) |  |
 | 11/12 and 11/14 | R packages I | [slides](https://UofUEpiBio.github.io/PHS7045-advanced-programming/13-rpkgs-i/slides.html) ([source](https://github.com/UofUEpiBio/PHS7045-advanced-programming//tree/main/13-rpkgs-i/slides.qmd)) | [lab](https://UofUEpiBio.github.io/PHS7045-advanced-programming/13-rpkgs-i/lab.html) ([source](https://github.com/UofUEpiBio/PHS7045-advanced-programming//tree/main/13-rpkgs-i/lab.qmd)) |
 | 11/19 and 11/21 | R packages II |  |  |
-| 11/26 and 11/28 (off) | Automatic Reports with GitHub Actions |  |  |
+| 11/26 and 11/28 (off) | Automatic Reports with GitHub Actions | [slides](https://UofUEpiBio.github.io/PHS7045-advanced-programming/15-autoreport/slides.html) ([source](https://github.com/UofUEpiBio/PHS7045-advanced-programming//tree/main/15-autoreport/slides.qmd)) |  |
 | 12/03 and 12/05 | Final Prep (Hackathon) |  |  |
 | 12/12 | Final |  |  |
 

99-autoreport/fig/pubmed.png 15-autoreport/fig/pubmed.png99-autoreport/fig/pubmed.png renamed to 15-autoreport/fig/pubmed.png

@@ -12,7 +12,7 @@ date,week,name,id,issue,extra
 10/29 and 10/31,11,Slurm,11-slurm-week1,,+ Homework 4 (Slurm)
 11/05 and 11/07,12,More practice with slurm,12-slurm-week2,,+ [Homework 4](https://UofUEpiBio.github.io/PHS7045-advanced-programming/12-slurm-week2/12-slurm-hw.html) ([source](12-slurm-week2/12-slurm-hw.qmd))
 11/12 and 11/14,13,R packages I,13-rpkgs-i,,
-11/19 and 11/21,14,R packages II,07-rpkgs-i,,
-11/26 and 11/28 (off),15,Automatic Reports with GitHub Actions,99-autoreport,,
+11/19 and 11/21,14,R packages II,,,
+11/26 and 11/28 (off),15,Automatic Reports with GitHub Actions,15-autoreport,,
 12/03 and 12/05,16,Final Prep (Hackathon),,,
 12/12,17,Final,,,