HuntLab-smallRNA/mkdocs.yml at main · Vicky-Hunt-Lab/HuntLab-smallRNA · GitHub

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site_name: Hunt Lab Small RNA Pipeline
site_url: https://Vicky-Hunt-Lab.github.io/HuntLab-smallRNA/
repo_url: https://github.com/Vicky-Hunt-Lab/HuntLab-smallRNA
repo_name: Vicky-Hunt-Lab/HuntLab-smallRNA
copyright: Copyright &copy; 2021 - 2025 Kieran Reynolds & Vicky Hunt Lab Members
nav:
  - Home: index.md
  - Installation: installation.md
  - Walkthrough:
    - Overview: walkthrough/index.md
    - Prerequisites and Considerations: walkthrough/prereq.md
    - The Config File: walkthrough/config.md
    - Running Trim: walkthrough/trim.md
    - Running Sort: walkthrough/sort.md
    - Running Unitas: walkthrough/unitas.md
    - Running TargetID: walkthrough/targetid.md
  - Other Tasks: other-tasks.md
  - CLI Reference:
    - Overview: cli-reference/index.md
    - ExtractNC: cli-reference/extractnc.md
    - Label for Unitas: cli-reference/label-for-unitas.md
    - Build Coord Files: cli-reference/build-coord-files.md
    - Overlap SS: cli-reference/overlapss.md
theme:
  name: material
  features:
    - navigation.instant
    - navigation.path
    - navigation.footer
    - navigation.tabs
    - navigation.tabs.sticky
    - toc.follow
    - toc.integrate
    - content.code.copy
markdown_extensions:
  - admonition
  - pymdownx.details
  - pymdownx.superfences
extra:
  version:
    provider: mike