Fixed references

Author: janakarana

paper/paper.bib

@@ -8,19 +8,20 @@ @article{Aernouts2013
 	publisher = {Optica Publishing Group},
 	title = {Supercontinuum laser based optical characterization of Intralipid{\textregistered} phantoms in the 500-2250 nm range},
 	volume = {21},
+	number = {26},
 	month = {Dec},
 	year = {2013},
 	url = {https://opg.optica.org/oe/abstract.cfm?URI=oe-21-26-32450},
 	doi = {10.1364/OE.21.032450},
 }
-@article{Bhandari11,
+@article{Bhandari2011,
 	title      = {Modeling optical properties of human skin using Mie theory for particles with different size distributions and refractive indices},
 	author     = {A. Bhandari and B. Hamre and {\O}. Frette and K. Stamnes and J. J. Stamnes},
 	journal    = {Opt. Express},	
+	volume     = {19},
 	number     = {15},
 	pages      = {14549--14567},
-	publisher  = {Optica Publishing Group},	
-	volume     = {19},
+	publisher  = {Optica Publishing Group},		
 	month = {Jul},
 	year = {2011},
 	doi = {10.1364/OE.19.014549}
@@ -35,18 +36,19 @@ @book{Bohren1983
 @article{Chalut2008,
 	title={Application of Mie theory to assess structure of spheroidal scattering in backscattering geometries},
 	author={Chalut, Kevin J and Giacomelli, Michael G and Wax, Adam},
-	journal={J Opt Soc Am A Opt Image Sci Vis},
+	journal={J Opt Soc Am A},
 	volume={25},
 	number={8},
 	pages={1866--1874},
 	year={2008},
+	month = {Aug},
 	publisher={Optical Society of America},
 	doi={10.1364/josaa.25.001866}
 }
 @article{DiNinni2011,
 	author = {Di Ninni, P and Martelli, F and Zaccanti, G},
 	title = {{Intralipid: towards a diffusive reference standard for optical tissue phantoms}},
-	journal = {Physics in Medicine \& Biology},
+	journal = {Phys. Med. Biol.},
 	volume = {56},
 	number = {2},
 	pages = {N21--N28},
@@ -57,7 +59,7 @@ @article{DiNinni2011
 @article{Galy2020,
 	title = {Revisiting independent versus dependent scattering regimes in suspensions or aggregates of spherical particles},
 	author = {Galy, Tiphaine and Huang, Daniel and Pilon, Laurent},
-	journal = {Journal of Quantitative Spectroscopy and Radiative Transfer},
+	journal = {J. Quant. Spectrosc. Radiat. Transfer},
 	volume = {246},
 	pages = {106924},
 	year = {2020},
@@ -69,7 +71,7 @@ @article{Gelebart1996
 	title        = {{Phase function simulation in tissue phantoms: a fractal approach}},
 	author       = {G{\'{e}}l{\'{e}}bart, Bernard and Tinet, Eric and Tualle, Jean Michel and Avrillier, Sigrid},
 	year         = 1996,
-	journal      = {Pure and Applied Optics},
+	journal      = {Pure and Appl. Opt.},
 	volume       = 5,
 	number       = 4,
 	pages        = {377--388},
@@ -86,37 +88,35 @@ @book{Goody1989
 	edition      = {2nd Edition}
 }
 @article{Horvath2009,
-	title        = {{Light scattering: Mie and More commemorating 100 years of Mie's 1908 publication}},
+	title        = {Light scattering: Mie and more – Commemorating 100 years of Mie's 1908 publication},
 	author       = {Horvath, Helmuth},
 	year         = 2009,
-	journal      = {Journal of Quantitative Spectroscopy and Radiative Transfer},
+	journal      = {J. Quant. Spectrosc. Radiat. Transfer},
 	volume       = 110,
 	number       = 11,
 	pages        = {783--786},
 	doi          = {10.1016/j.jqsrt.2009.03.001},
-	issn         = {00224073}
+	issn         = {0022-4073},
 }
 @article{Jacques2013,
 	title        = {{Optical properties of biological tissues: a review}},
 	author       = {Jacques, Steven L.},
 	year         = 2013,
-	month        = {jul},
+	month        = {may},
 	journal      = {Phys. Med. Biol.},
 	volume       = 58,
-	number       = 14,
-	pages        = {5007--5008},
-	doi          = {10.1088/0031-9155/58/14/5007},
-	issn         = {0031-9155},
-	url          = {http://stacks.iop.org/0031-9155/58/i=14/a=5007?key=crossref.c531ac37cfa1f77bbc0d33a8e92de8c9}
+	number       = 11,
+	pages        = {R37-R61},
+	doi          = {10.1088/0031-9155/58/11/R37}
 }
 @article{Kodach2011,
 	author = {V. M. Kodach and D. J. Faber and J. van Marle and T. G. van Leeuwen and J. Kalkman},
-	journal = {Opt. Express},	
-	number = {7},
+	journal = {Opt. Express},		
 	pages = {6131--6140},
 	publisher = {Optica Publishing Group},
 	title = {Determination of the scattering anisotropy with optical coherence tomography},
 	volume = {19},
+	number = {7},
 	month = {Mar},
 	year = {2011},
 	url = {https://opg.optica.org/oe/abstract.cfm?URI=oe-19-7-6131},
@@ -126,13 +126,12 @@ @article{Majic2020
 	title        = {{Numerically stable formulation of Mie theory for an emitter close to a sphere}},
 	author       = {Majic, Matt and {Le Ru}, Eric C.},
 	year         = 2020,
-	journal      = {Applied Optics},
+	journal      = {Appl. Opt.},
 	volume       = 59,
 	number       = 5,
-	pages        = 1293,
+	pages        = 1293-1300,
 	doi          = {10.1364/ao.379694},
-	issn         = {1559-128X},
-	pmid         = 32225380
+	issn         = {1559-128X}
 }
 @article{Mie1908,
 	author = {Mie, Gustav},
@@ -154,14 +153,13 @@ @article{Mourant1997
 	author = {Judith R. Mourant and Tamika Fuselier and James Boyer and Tamara M. Johnson and Irving J. Bigio},
 	journal = {Appl. Opt.},
 	keywords = {Absorption coefficient; Elastic scattering; Mie scattering; Optical properties; Refractive index; Turbid media},
-	number = {4},
 	pages = {949--957},
 	publisher = {Optica Publishing Group},
 	title = {Predictions and measurements of scattering and absorption over broadwavelength ranges in tissue phantoms},
 	volume = {36},
+	number = {4},
 	month = {Feb},
 	year = {1997},
-	url = {https://opg.optica.org/ao/abstract.cfm?URI=ao-36-4-949},
 	doi = {10.1364/AO.36.000949}
 }
 @article{PoinsinetdeSivry-Houle2023,
@@ -192,36 +190,32 @@ @article{Raju2017
 	volume = {56},
 	month = {Feb},
 	year = {2017},
-	url = {https://opg.optica.org/ao/abstract.cfm?URI=ao-56-4-1157},
 	doi = {10.1364/AO.56.001157},
 }
 @article{Saidi1995,
-	title        = {{Mie and Rayleigh modeling of visible-light scattering in neonatal skin}},
+	title        = {Mie and Rayleigh modeling of visible-light scattering in neonatal skin},
 	author       = {Saidi, Iyad S. and Jacques, Steven L. and Tittel, Frank K.},
 	year         = 1995,
 	month        = {nov},
-	journal      = {Applied Optics},
+	journal      = {Appl. Opt.},
 	publisher    = {Optical Society of America},
 	volume       = 34,
 	number       = 31,
 	pages        = {7410--7418},
 	doi          = {10.1364/ao.34.007410},
-	issn         = {0003-6935},
-	url          = {http://www.ncbi.nlm.nih.gov/pubmed/21060615}
+	issn         = {0003-6935}
 }
 @article{Schmitt1998,
-	title        = {{Optical scattering properties of soft tissue: a discrete particle model.}},
+	title        = {Optical scattering properties of soft tissue: a discrete particle model.},
 	author       = {Schmitt, J M and Kumar, G},
 	year         = 1998,
 	month        = {may},
-	journal      = {Applied optics},
+	journal      = {Appl. Opt.},
 	volume       = 37,
 	number       = 13,
 	pages        = {2788--2797},
 	doi          = {10.1364/AO.37.002788},
-	issn         = {0003-6935},
-	url          = {http://www.ncbi.nlm.nih.gov/pubmed/18273225},
-	pmid         = 18273225
+	issn         = {0003-6935}
 }
 @book{Seinfeld1998,
 	author = {Seinfeld, John H. and Pandis, Spyros N.},
@@ -232,9 +226,9 @@ @book{Seinfeld1998
 	isbn = {0-471-17815-2}
 }
 @article{Sumlin2018,
-	title        = {{Retrieving the aerosol complex refractive index using PyMieScatt: A Mie computational package with visualization capabilities}},
+	title        = {Retrieving the aerosol complex refractive index using PyMieScatt: A Mie computational package with visualization capabilities},
 	author       = {Benjamin J. Sumlin and William R. Heinson and Rajan K. Chakrabarty},
-	journal      = {Journal of Quantitative Spectroscopy and Radiative Transfer},
+	journal      = {J. Quant. Spectrosc. Radiat. Transfer},
 	volume       = {205},
 	pages        = {127-134},
 	year         = {2018},
@@ -244,8 +238,8 @@ @article{Sumlin2018
 }
 @Article{Teri2022,
 	author = {Teri, M. and M\"uller, T. and Gasteiger, J. and Valentini, S. and Horvath, H. and Vecchi, R. and Bauer, P. and Walser, A. and Weinzierl, B.},
-	title = {Impact of particle size, refractive index, and shape on the determination of the particle scattering coefficient -- an optical closure study evaluating different nephelometer angular truncation and illumination corrections},
-	journal = {Atmospheric Measurement Techniques},
+	title = {Impact of particle size, refractive index, and shape on the determination of the particle scattering coefficient – an optical closure study evaluating different nephelometer angular truncation and illumination corrections},
+	journal = {Atmosph. Meas. Tech.},
 	volume = {15},
 	year = {2022},
 	number = {10},
@@ -255,7 +249,7 @@ @Article{Teri2022
 @article{Tien1987,
 	author  = {Tien, C. L. and Drolen, B. L.},
 	title   = {Thermal radiation in particulate media with dependent and independent scattering},
-	journal = {Annual Review of Numerical Fluid Mechanics and Heat Transfer},
+	journal = {Annu. Rev. Heat Trans.},
 	year    = {1987},
 	volume  = {1},
 	pages   = {1--32},
@@ -270,9 +264,9 @@ @book{VandeHulst1957
 	pages        = 470
 }
 @article{vanStaveren1991,
-	author  = {van Staveren, Hugo J. and Moes, Christian J. M. and van Marie, Jan and Prahl, Scott A. and van Gemert, Martin J. C.},
+	author  = {Hugo J. van Staveren and Christian J. M. Moes and Jan van Marie and Scott A. Prahl and Martin J. C. van Gemert},
 	title   = {Light scattering in lntralipid-10\% in the wavelength range of 400–1100 nm},
-	journal = {Applied Optics},
+	journal = {Appl. Opt.},
 	year    = {1991},
 	volume  = {30},
 	number  = {31},
@@ -283,25 +277,21 @@ @article{Wang2005
 	title        = {{Approximation of Mie scattering parameters in near-infrared tomography of normal breast tissue in vivo}},
 	author       = {Wang, Xin and Pogue, Brian W. and Jiang, Shudong and Song, Xiaomei and Paulsen, Keith D. and Kogel, Christine and Poplack, Steven P. and Wells, Wendy A.},
 	year         = 2005,
-	journal      = {Journal of Biomedical Optics},
+	journal      = {J Biomed. Opt.},
 	volume       = 10,
 	number       = 5,
 	pages        = {051704},
 	doi          = {10.1117/1.2098607},
-	issn         = 10833668,
-	pmid         = 16292956
+	issn         = 10833668
 }
 @techreport{Wiscombe1979,
 	title        = {{Mie Scattering Calculations : Advances in Technique and Fast, Vector-Speed Computer Codes}},
 	author       = {Wiscombe, Warren J},
-	year         = 1979,
-	address      = {Boulder, CO},
-	number       = {NCAR TECHNICAL NOTE},
-	pages        = {1--98},
-	url          = {https://opensky.ucar.edu/islandora/object/technotes:232},
-	institution  = {National Center for Atmospheric Research},
-	keywords     = {Mie Theory,Scattering,Sphere},
-	mendeley-tags = {Mie Theory,Scattering,Sphere}
+	year={1979},
+	institution={National Center for Atmospheric Research (NCAR)},
+	address={Boulder, Colorado},
+	number={NCAR/TN-140+STR},
+	doi={10.5065/D6ZP4414},
 }
 @article{Wiscombe1980,
 	author = {W. J. Wiscombe},

paper/paper.md

@@ -43,9 +43,9 @@ Mie theory is a mathematical framework derived from Maxwell's equations that mod
 
 # Statement of need
 
-Mie theory is derived from Maxwell's equations and provides a comprehensive framework for modeling electromagnetic scattering by spherical particles [@Horvath2009; @Mie1908]. Mie theory is utilized across diverse fields, ranging from nanomaterials and biomedical optics to atmospheric science and astronomy [@Goody1989; @Saidi1995; @Wang2005; @Chalut2008; @Bhandari11]. Despite its broad applicability, the theory's reliance on complex mathematical constructs, such as infinite series and special functions [@VandeHulst1957; @Bohren1983; @Wiscombe1980; @Majic2020], demands advanced computational implementation. 
+Mie theory is derived from Maxwell's equations and provides a comprehensive framework for modeling electromagnetic scattering by spherical particles [@Horvath2009; @Mie1908]. Mie theory is utilized across diverse fields, ranging from nanomaterials and biomedical optics to atmospheric science and astronomy [@Goody1989; @Saidi1995; @Wang2005; @Chalut2008; @Bhandari2011]. Despite its broad applicability, the theory's reliance on complex mathematical constructs, such as infinite series and special functions [@VandeHulst1957; @Bohren1983; @Wiscombe1980; @Majic2020], demands advanced computational implementation. 
 
-While numerous Mie simulation packages are available (many of which are listed on [SCATTPORT.org](https://scattport.org) and [Wikipedia](https://en.wikipedia.org/wiki/Codes_for_electromagnetic_scattering_by_spheres)), they generally fall into two categories: older, established codes focusing on computational efficiency [@Wiscombe1980; @Bohren1983], and newer, object-oriented libraries typically hosted on version-control platforms [@Sumlin2018; @PoinsinetdeSivry-Houle2023; @Prahl_mie; @MieScattering]. Although both categories provide robust computational engines, they usually demand significant programming proficiency. This requirement creates a barrier for experimentalists, clinical scientists, and educators who need these analytical capabilities but may lack the specialized coding expertise to integrate such libraries into their workflows.
+While numerous Mie simulation packages are available (many of which are listed on [SCATTPORT.org](https://scattport.org/index.php/light-scattering-software) and [Wikipedia](https://en.wikipedia.org/wiki/Codes_for_electromagnetic_scattering_by_spheres)), they generally fall into two categories: older, established codes focusing on computational efficiency [@Wiscombe1980; @Bohren1983], and newer, object-oriented libraries typically hosted on version-control platforms [@Sumlin2018; @PoinsinetdeSivry-Houle2023; @Prahl_mie; @MieScattering]. Although both categories provide robust computational engines, they usually demand significant programming proficiency. This requirement creates a barrier for experimentalists, clinical scientists, and educators who need these analytical capabilities but may lack the specialized coding expertise to integrate such libraries into their workflows.
 
 `MieSimulatorGUI` bridges this gap by providing an intuitive, cross-platform desktop application that computes and fits scattering parameters for monodisperse and polydisperse distributions without any coding. Unlike standard implementations, it supports heterogeneous polydispersity, allowing users to assign bin-specific complex refractive indices via custom data inputs, a feature often absent in simplified GUI tools. The tool facilitates high-impact use cases such as biomedical optics [@Mourant1997; @Wang2005; @Jacques2013] and atmospheric research [@Seinfeld1998; @Teri2022], where users can define complex particle configurations and directly fit spectrally-varying reduced scattering coefficients. By integrating a powerful C/C++ computational engine with intuitive [Qt](https://www.qt.io/) interface, `MieSimulatorGUI` offers accessible, yet powerful Mie theory computations, facilitating both streamlined research analysis and interactive pedagogical demonstrations.