Add more ontology annotations

Author: linkvt

src/main/java/de/linkvt/bachelor/config/OntologyIriExtractor.java

@@ -1,5 +1,8 @@
 package de.linkvt.bachelor.config;
 
+import de.linkvt.bachelor.web.GeneratorController;
+
+import org.apache.commons.lang3.StringUtils;
 import org.springframework.stereotype.Component;
 
 /**
@@ -8,6 +11,12 @@
 @Component
 public class OntologyIriExtractor {
 
+  public String extractGeneratorIri(String url) {
+    String urlWithoutIdAndFilename = trimFilenameAndId(url);
+
+    return trimOntologyPath(urlWithoutIdAndFilename);
+  }
+
   public String extractOntologyIri(String url, Long generationId) {
     String urlWithoutFilename = trimFilenameAndId(url);
 
@@ -17,4 +26,9 @@ public String extractOntologyIri(String url, Long generationId) {
   private String trimFilenameAndId(String url) {
     return url.replaceAll("(\\d+/)?[^/]*$", "");
   }
+
+  private String trimOntologyPath(String url) {
+    return StringUtils.stripEnd(url, GeneratorController.ONTOLOGY_PATH);
+  }
+
 }

src/main/java/de/linkvt/bachelor/features/annotations/ontology/OntologyConstants.java

@@ -1,5 +1,6 @@
 package de.linkvt.bachelor.features.annotations.ontology;
 
+import org.semanticweb.owlapi.model.IRI;
 import org.springframework.stereotype.Component;
 
 import java.text.SimpleDateFormat;
@@ -8,6 +9,9 @@
 @Component
 public class OntologyConstants {
 
+  public static final IRI ONTOVIBE_CORE_IRI = IRI.create("http://ontovibe.visualdataweb.org/");
+  public static final IRI ONTOVIBE_MINIMAL_IRI = IRI.create("http://ontovibe.visualdataweb.org/minimal/");
+
   public String getContributor() {
     return "Vincent Link";
   }

src/main/java/de/linkvt/bachelor/features/annotations/ontology/owl/OwlBackwardCompatibleWithFeature.java

@@ -0,0 +1,41 @@
+package de.linkvt.bachelor.features.annotations.ontology.owl;
+
+import de.linkvt.bachelor.features.Feature;
+import de.linkvt.bachelor.features.FeatureCategory;
+import de.linkvt.bachelor.features.annotations.ontology.OntologyConstants;
+
+import org.semanticweb.owlapi.model.AddOntologyAnnotation;
+import org.semanticweb.owlapi.model.IRI;
+import org.semanticweb.owlapi.model.OWLAnnotation;
+import org.semanticweb.owlapi.model.OWLAnnotationProperty;
+import org.springframework.stereotype.Component;
+
+@Component
+public class OwlBackwardCompatibleWithFeature extends Feature {
+
+  private static final String OWL_BACKWARD_COMPATIBLE_WITH = "owl:backwardCompatibleWith";
+
+  @Override
+  public void addToOntology() {
+    OWLAnnotationProperty annotationProperty = factory.getOWLAnnotationProperty(OWL_BACKWARD_COMPATIBLE_WITH, pm);
+    IRI value = OntologyConstants.ONTOVIBE_MINIMAL_IRI;
+    OWLAnnotation annotation = factory.getOWLAnnotation(annotationProperty, value);
+
+    addChangeToOntology(new AddOntologyAnnotation(ontology, annotation));
+  }
+
+  @Override
+  public String getName() {
+    return OWL_BACKWARD_COMPATIBLE_WITH;
+  }
+
+  @Override
+  public String getToken() {
+    return "owlbackwardcompatiblewith";
+  }
+
+  @Override
+  public FeatureCategory getCategory() {
+    return FeatureCategory.ANNOTATIONS;
+  }
+}

src/main/java/de/linkvt/bachelor/features/annotations/ontology/owl/OwlImportsFeature.java

@@ -0,0 +1,41 @@
+package de.linkvt.bachelor.features.annotations.ontology.owl;
+
+import de.linkvt.bachelor.features.Feature;
+import de.linkvt.bachelor.features.FeatureCategory;
+import de.linkvt.bachelor.features.annotations.ontology.OntologyConstants;
+
+import org.semanticweb.owlapi.model.AddOntologyAnnotation;
+import org.semanticweb.owlapi.model.IRI;
+import org.semanticweb.owlapi.model.OWLAnnotation;
+import org.semanticweb.owlapi.model.OWLAnnotationProperty;
+import org.springframework.stereotype.Component;
+
+@Component
+public class OwlImportsFeature extends Feature {
+
+  private static final String OWL_IMPORTS = "owl:imports";
+
+  @Override
+  public void addToOntology() {
+    OWLAnnotationProperty annotationProperty = factory.getOWLAnnotationProperty(OWL_IMPORTS, pm);
+    IRI value = OntologyConstants.ONTOVIBE_MINIMAL_IRI;
+    OWLAnnotation annotation = factory.getOWLAnnotation(annotationProperty, value);
+
+    addChangeToOntology(new AddOntologyAnnotation(ontology, annotation));
+  }
+
+  @Override
+  public String getName() {
+    return OWL_IMPORTS;
+  }
+
+  @Override
+  public String getToken() {
+    return "owlimports";
+  }
+
+  @Override
+  public FeatureCategory getCategory() {
+    return FeatureCategory.ANNOTATIONS;
+  }
+}

src/main/java/de/linkvt/bachelor/features/annotations/ontology/owl/OwlIncompatibleWithFeature.java

@@ -0,0 +1,41 @@
+package de.linkvt.bachelor.features.annotations.ontology.owl;
+
+import de.linkvt.bachelor.features.Feature;
+import de.linkvt.bachelor.features.FeatureCategory;
+import de.linkvt.bachelor.features.annotations.ontology.OntologyConstants;
+
+import org.semanticweb.owlapi.model.AddOntologyAnnotation;
+import org.semanticweb.owlapi.model.IRI;
+import org.semanticweb.owlapi.model.OWLAnnotation;
+import org.semanticweb.owlapi.model.OWLAnnotationProperty;
+import org.springframework.stereotype.Component;
+
+@Component
+public class OwlIncompatibleWithFeature extends Feature {
+
+  private static final String OWL_INCOMPATIBLE_WITH = "owl:incompatibleWith";
+
+  @Override
+  public void addToOntology() {
+    OWLAnnotationProperty annotationProperty = factory.getOWLAnnotationProperty(OWL_INCOMPATIBLE_WITH, pm);
+    IRI value = OntologyConstants.ONTOVIBE_CORE_IRI;
+    OWLAnnotation annotation = factory.getOWLAnnotation(annotationProperty, value);
+
+    addChangeToOntology(new AddOntologyAnnotation(ontology, annotation));
+  }
+
+  @Override
+  public String getName() {
+    return OWL_INCOMPATIBLE_WITH;
+  }
+
+  @Override
+  public String getToken() {
+    return "owlincompatiblewith";
+  }
+
+  @Override
+  public FeatureCategory getCategory() {
+    return FeatureCategory.ANNOTATIONS;
+  }
+}

src/main/java/de/linkvt/bachelor/features/annotations/ontology/owl/OwlPriorVersionFeature.java

@@ -0,0 +1,41 @@
+package de.linkvt.bachelor.features.annotations.ontology.owl;
+
+import de.linkvt.bachelor.features.Feature;
+import de.linkvt.bachelor.features.FeatureCategory;
+import de.linkvt.bachelor.features.annotations.ontology.OntologyConstants;
+
+import org.semanticweb.owlapi.model.AddOntologyAnnotation;
+import org.semanticweb.owlapi.model.IRI;
+import org.semanticweb.owlapi.model.OWLAnnotation;
+import org.semanticweb.owlapi.model.OWLAnnotationProperty;
+import org.springframework.stereotype.Component;
+
+@Component
+public class OwlPriorVersionFeature extends Feature {
+
+  private static final String OWL_PRIOR_VERSION = "owl:priorVersion";
+
+  @Override
+  public void addToOntology() {
+    OWLAnnotationProperty annotationProperty = factory.getOWLAnnotationProperty(OWL_PRIOR_VERSION, pm);
+    IRI value = OntologyConstants.ONTOVIBE_CORE_IRI;
+    OWLAnnotation annotation = factory.getOWLAnnotation(annotationProperty, value);
+
+    addChangeToOntology(new AddOntologyAnnotation(ontology, annotation));
+  }
+
+  @Override
+  public String getName() {
+    return OWL_PRIOR_VERSION;
+  }
+
+  @Override
+  public String getToken() {
+    return "owlpriorversion";
+  }
+
+  @Override
+  public FeatureCategory getCategory() {
+    return FeatureCategory.ANNOTATIONS;
+  }
+}

src/main/java/de/linkvt/bachelor/features/annotations/ontology/owl/OwlVersionIriFeature.java

@@ -0,0 +1,44 @@
+package de.linkvt.bachelor.features.annotations.ontology.owl;
+
+import de.linkvt.bachelor.features.Feature;
+import de.linkvt.bachelor.features.FeatureCategory;
+
+import org.semanticweb.owlapi.model.AddOntologyAnnotation;
+import org.semanticweb.owlapi.model.IRI;
+import org.semanticweb.owlapi.model.OWLAnnotation;
+import org.semanticweb.owlapi.model.OWLAnnotationProperty;
+import org.springframework.stereotype.Component;
+
+import java.util.Optional;
+
+@Component
+public class OwlVersionIriFeature extends Feature {
+
+  private static final String OWL_VERSION_IRI = "owl:versionIri";
+
+  @Override
+  public void addToOntology() {
+    Optional<IRI> iri = ontology.getOntologyID().getDefaultDocumentIRI();
+    assert iri.isPresent();
+
+    OWLAnnotationProperty annotationProperty = factory.getOWLAnnotationProperty(OWL_VERSION_IRI, pm);
+    OWLAnnotation annotation = factory.getOWLAnnotation(annotationProperty, iri.get());
+
+    addChangeToOntology(new AddOntologyAnnotation(ontology, annotation));
+  }
+
+  @Override
+  public String getName() {
+    return OWL_VERSION_IRI;
+  }
+
+  @Override
+  public String getToken() {
+    return "owlversioniri";
+  }
+
+  @Override
+  public FeatureCategory getCategory() {
+    return FeatureCategory.ANNOTATIONS;
+  }
+}

src/main/java/de/linkvt/bachelor/features/annotations/ontology/rdfs/RdfsIsDefinedByFeature.java

@@ -0,0 +1,44 @@
+package de.linkvt.bachelor.features.annotations.ontology.rdfs;
+
+import de.linkvt.bachelor.features.Feature;
+import de.linkvt.bachelor.features.FeatureCategory;
+import de.linkvt.bachelor.web.RequestInformation;
+
+import org.semanticweb.owlapi.model.AddOntologyAnnotation;
+import org.semanticweb.owlapi.model.IRI;
+import org.semanticweb.owlapi.model.OWLAnnotation;
+import org.semanticweb.owlapi.model.OWLAnnotationProperty;
+import org.springframework.beans.factory.annotation.Autowired;
+import org.springframework.stereotype.Component;
+
+@Component
+public class RdfsIsDefinedByFeature extends Feature {
+
+  private static final String RDFS_IS_DEFINED_BY = "rdfs:isDefinedBy";
+
+  @Autowired
+  private RequestInformation requestInformation;
+
+  @Override
+  public void addToOntology() {
+    OWLAnnotationProperty annotationProperty = factory.getOWLAnnotationProperty(RDFS_IS_DEFINED_BY, pm);
+    OWLAnnotation annotation = factory.getOWLAnnotation(annotationProperty, IRI.create(requestInformation.getGeneratorIri()));
+
+    addChangeToOntology(new AddOntologyAnnotation(ontology, annotation));
+  }
+
+  @Override
+  public String getName() {
+    return RDFS_IS_DEFINED_BY;
+  }
+
+  @Override
+  public String getToken() {
+    return "rdfsisdefinedby";
+  }
+
+  @Override
+  public FeatureCategory getCategory() {
+    return FeatureCategory.ANNOTATIONS;
+  }
+}

src/main/java/de/linkvt/bachelor/features/annotations/ontology/rdfs/RdfsSeeAlsoFeature.java

@@ -0,0 +1,44 @@
+package de.linkvt.bachelor.features.annotations.ontology.rdfs;
+
+import de.linkvt.bachelor.features.Feature;
+import de.linkvt.bachelor.features.FeatureCategory;
+import de.linkvt.bachelor.web.RequestInformation;
+
+import org.semanticweb.owlapi.model.AddOntologyAnnotation;
+import org.semanticweb.owlapi.model.IRI;
+import org.semanticweb.owlapi.model.OWLAnnotation;
+import org.semanticweb.owlapi.model.OWLAnnotationProperty;
+import org.springframework.beans.factory.annotation.Autowired;
+import org.springframework.stereotype.Component;
+
+@Component
+public class RdfsSeeAlsoFeature extends Feature {
+
+  private static final String RDFS_SEE_ALSO = "rdfs:seeAlso";
+
+  @Autowired
+  private RequestInformation requestInformation;
+
+  @Override
+  public void addToOntology() {
+    OWLAnnotationProperty annotationProperty = factory.getOWLAnnotationProperty(RDFS_SEE_ALSO, pm);
+    OWLAnnotation annotation = factory.getOWLAnnotation(annotationProperty, IRI.create(requestInformation.getGeneratorIri()));
+
+    addChangeToOntology(new AddOntologyAnnotation(ontology, annotation));
+  }
+
+  @Override
+  public String getName() {
+    return RDFS_SEE_ALSO;
+  }
+
+  @Override
+  public String getToken() {
+    return "rdfsseealso";
+  }
+
+  @Override
+  public FeatureCategory getCategory() {
+    return FeatureCategory.ANNOTATIONS;
+  }
+}

src/main/java/de/linkvt/bachelor/web/RequestInformation.java

@@ -5,14 +5,15 @@
 
 import org.springframework.beans.factory.annotation.Autowired;
 import org.springframework.context.annotation.Scope;
+import org.springframework.context.annotation.ScopedProxyMode;
 import org.springframework.stereotype.Component;
 import org.springframework.web.context.WebApplicationContext;
 
 import javax.servlet.http.HttpServletRequest;
 
 
 @Component
-@Scope(WebApplicationContext.SCOPE_REQUEST)
+@Scope(value = WebApplicationContext.SCOPE_REQUEST, proxyMode = ScopedProxyMode.TARGET_CLASS)
 public class RequestInformation {
 
   private HttpServletRequest request;
@@ -43,4 +44,8 @@ public OntologyGenerator getGenerator() {
   public String getOntologyIri() {
     return ontologyIriExtractor.extractOntologyIri(request.getRequestURL().toString(), generationId);
   }
+
+  public String getGeneratorIri() {
+    return ontologyIriExtractor.extractGeneratorIri(request.getRequestURL().toString());
+  }
 }