From b75343ec9a3ccd8d623726806b711acd965e23b1 Mon Sep 17 00:00:00 2001 From: tonywu1999 Date: Fri, 24 Apr 2026 15:00:04 -0400 Subject: [PATCH] fix(dataProcessPlotsPTM): Fix documentation around originalPlots parameter --- R/dataProcessPlotsPTM.R | 2 +- man/DIANNtoMSstatsPTMFormat.Rd | 2 +- man/dataProcessPlotsPTM.Rd | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/R/dataProcessPlotsPTM.R b/R/dataProcessPlotsPTM.R index 9656e2f..2d54230 100644 --- a/R/dataProcessPlotsPTM.R +++ b/R/dataProcessPlotsPTM.R @@ -52,7 +52,7 @@ #' @param which.Protein List of proteins to plot. Will plot all PTMs associated #' with listed Proteins. Default is NULL which will default to which.PTM. #' @param originalPlot TRUE(default) draws original profile plots, without -#' normalization. +#' summarization. #' @param summaryPlot TRUE(default) draws profile plots with protein #' summarization for each channel and MS run. #' @param address the name of folder that will store the results. Default folder diff --git a/man/DIANNtoMSstatsPTMFormat.Rd b/man/DIANNtoMSstatsPTMFormat.Rd index e2139c0..a287b1b 100644 --- a/man/DIANNtoMSstatsPTMFormat.Rd +++ b/man/DIANNtoMSstatsPTMFormat.Rd @@ -84,7 +84,7 @@ will be saved to a file.} \item{append}{logical. If TRUE, information about data processing will be added to an existing log file.} -\item{verbose}{logical. If TRUE, information about data processing wil be printed +\item{verbose}{logical. If TRUE, information about data processing will be printed to the console.} \item{log_file_path}{character. Path to a file to which information about diff --git a/man/dataProcessPlotsPTM.Rd b/man/dataProcessPlotsPTM.Rd index 84174e7..c79f5e7 100644 --- a/man/dataProcessPlotsPTM.Rd +++ b/man/dataProcessPlotsPTM.Rd @@ -80,7 +80,7 @@ Default is "all", which generates all plots for each protein. For QC plot, with listed Proteins. Default is NULL which will default to which.PTM.} \item{originalPlot}{TRUE(default) draws original profile plots, without -normalization.} +summarization.} \item{summaryPlot}{TRUE(default) draws profile plots with protein summarization for each channel and MS run.}