Resolve bugs (#66)

* fix reference to body.hydroForce in meanDrift

* fix references to h5File in Controls applications

* fix simu.cicEndTime definition in WECCCOMP MPC wecSimInputFile.m

* update test to run mostIO after the regression test

* re-add turbsim to MOST test setup

Author: akeeste

Controls/Declutching/optimalTimeCalc.m

@@ -11,7 +11,7 @@
 waves.period = 3.5;
 
 % Load hydrodynamic data for float from BEM
-hydro = readBEMIOH5(body.h5File, 1, body.meanDrift);
+hydro = readBEMIOH5(body.h5File{1}, 1, body.meanDrift);
 
 % Define wave conditions
 H = waves.height;

Controls/Latching/optimalTimeCalc.m

@@ -11,7 +11,7 @@
 waves.period = 9.6664;
 
 % Load hydrodynamic data for float from BEM
-hydro = readBEMIOH5(body.h5File, 1, body.meanDrift);
+hydro = readBEMIOH5(body.h5File{1}, 1, body.meanDrift);
 
 % Define wave conditions
 H = waves.height;

Controls/MPC/plotFreqDep.m

@@ -7,7 +7,7 @@
 waves.period = 9.52;
 
 % Load hydrodynamic data for float from BEM
-hydro = readBEMIOH5(body.h5File, 1, body.meanDrift);
+hydro = readBEMIOH5(body.h5File{1}, 1, body.meanDrift);
 
 % Define the intrinsic mechanical impedance for the device
 mass = simu.rho*hydro.properties.volume;

Controls/MPC/setupMPC.m

@@ -1,7 +1,7 @@
 % This method sets up the variables to run model predictive control 
 
 % Load hydrodynamic data for float from BEM
-hydro = readBEMIOH5(body.h5File, 1, body.meanDrift);
+hydro = readBEMIOH5(body.h5File{1}, 1, body.meanDrift);
 
 disp('setting up MPC')
 

Controls/Passive (P)/optimalGainCalc.m

@@ -11,7 +11,7 @@
 waves.period = 9.6664; % One of periods from BEM
 
 % Load hydrodynamic data for float from BEM
-hydro = readBEMIOH5(body.h5File, 1, body.meanDrift);
+hydro = readBEMIOH5(body.h5File{1}, 1, body.meanDrift);
 
 % Define wave conditions
 H = waves.height;

Controls/Reactive (PI)/optimalGainCalc.m

@@ -9,7 +9,7 @@
 waves.period = 9.6664;
 
 % Load hydrodynamic data for float from BEM
-hydro = readBEMIOH5(body.h5File, 1, body.meanDrift);
+hydro = readBEMIOH5(body.h5File{1}, 1, body.meanDrift);
 
 % Define wave conditions
 H = waves.height;

MOST/tests/TestMOST.m

@@ -42,13 +42,11 @@ function runBEMIO(testCase)
             end
             cd(testCase.testDir)
         end
-        function runMOSTIO(testCase)
-            cd(testCase.mostDataDir);
-            if isfile(testCase.turbSimName)
-                fprintf('runMOSTIO skipped, turbSim/*.mat already exists\n');
-            else
-                mostIO
-            end
+        function runTurbSim(testCase)
+            % Only re-run turbSim before testing. The *.mat file is too
+            % large to commit to the repo. 
+            cd(fullfile(testCase.mostDataDir,'turbSim'));
+            run_turbsim();
             cd(testCase.testDir)
         end
         function runConstantTest(testCase)
@@ -201,5 +199,13 @@ function turbulent_windSpeed(testCase)
             fprintf(['Wind speed, Diff = '     ...
                      num2str(max(abs(org-new))) '\n']);
         end
+
+        function runMOSTIO(testCase)
+            % Test the pre-processing here so that it does not interfere
+            % with the precise comparison of results.
+            cd(testCase.mostDataDir);
+            mostIO
+            cd(testCase.testDir)
+        end
     end
 end

Mean_Drift/WECSim/userDefinedFunctions.m

@@ -1,6 +1,6 @@
 inds = find(output.wave.time >= simu.rampTime + waves.period*5);
 %%
-surgeMeanDriftTH = body.hydroForce.fExt.md(1)*waves.amplitude^2;
+surgeMeanDriftTH = body.hydroForce.hf1.fExt.md(1)*waves.amplitude^2;
 surgeMeanDriftWS = mean(output.bodies.forceExcitation(inds,1));
 %%
 close all

WECCCOMP/WECCCOMP_Nonlinear_Model_Predictive/wecSimInputFile.m

@@ -21,7 +21,7 @@
         case { 2, 5 };        simu.endTime        = 150 + simu.rampTime;
         case { 3, 6 };        simu.endTime        = 200 + simu.rampTime;
     end
-    simu.cicEndTime     = [];                       % Convolution Time [s]
+    simu.cicEndTime     = 2;                        % Convolution Time [s]
     simu.explorer       = 'off';                    % Explorer on
     simu.solver         = 'ode8';                   % Turn on ode45
     simu.domainSize     = 5;