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How far we got was completing all the planned work, including refactoring the R scripts, containerizing the workflow, developing the custom MultiQC plugin, and integrating everything into the main pipeline. The system has been tested, with team members reproducing each other’s results to ensure consistency and reliability. However, there remains considerable potential for extension on all fronts — from expanding the testing framework, to customizing the MultiQC plugin with additional metrics and visuals, as well as further optimizing the pipeline integration.
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## Key links
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- [Final presentation video](https://teams.microsoft.com/l/meetingrecap?driveId=b%21EPgSfCKDcEmnHp5UA_iucnXVUMoieq1ItAClUeP9BzcwOqxELEiiRZIWvH0oTUhJ&driveItemId=016DN6KD7FP4DTBMP7IFAZ6OIZTPZW5OLT&sitePath=https%3A%2F%2Fwehieduau-my.sharepoint.com%2F%3Av%3A%2Fg%2Fpersonal%2Fmosbergen_r_wehi_edu_au%2FEeV_BzCx_0FBnzkZm_NuuXMB84RWRwciLY8l4NIKS5to1g&fileUrl=https%3A%2F%2Fwehieduau-my.sharepoint.com%2F%3Av%3A%2Fg%2Fpersonal%2Fmosbergen_r_wehi_edu_au%2FEeV_BzCx_0FBnzkZm_NuuXMB84RWRwciLY8l4NIKS5to1g&iCalUid=040000008200E00074C5B7101A82E00807E90A081528B692F4FDDB01000000000000000010000000893FD68CEF6ADE47A7C44131144DECCE&masterICalUid=040000008200E00074C5B7101A82E008000000001528B692F4FDDB01000000000000000010000000893FD68CEF6ADE47A7C44131144DECCE&threadId=19%3Ameeting_MmE3NTJkYWEtNGEwNi00MWQ0LWFiODQtYjZmZmVkODNkNjAy%40thread.v2&organizerId=72629c7b-921b-4936-9bb5-bbdd233924c0&tenantId=aa7c72e2-c5cf-4a40-a22a-a585c04ca07c&callId=c438f472-a379-4d73-b017-5cadf267ec55&threadType=Meeting&meetingType=Recurring&subType=RecapSharingLink_RecapChiclet)
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- [Final presentation video](https://wehieduau-my.sharepoint.com/:v:/g/personal/mosbergen_r_wehi_edu_au/EeV_BzCx_0FBnzkZm_NuuXMBHp7nvgy9Ixh3mlaUMjAZSg?nav=eyJyZWZlcnJhbEluZm8iOnsicmVmZXJyYWxBcHAiOiJTdHJlYW1XZWJBcHAiLCJyZWZlcnJhbFZpZXciOiJTaGFyZURpYWxvZy1MaW5rIiwicmVmZXJyYWxBcHBQbGF0Zm9ybSI6IldlYiIsInJlZmVycmFsTW9kZSI6InZpZXcifX0%3D&e=f0t3BS)
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- [Final presentation slides](https://www.canva.com/design/DAG0c0yTlyA/B2FPIQQAbQznB3_4JKls7g/edit?utm_content=DAG0c0yTlyA&utm_campaign=designshare&utm_medium=link2&utm_source=sharebutton)
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- [Link to individual learning plans](https://wehieduau.sharepoint.com/:f:/r/sites/StudentInternGroupatWEHI/Shared%20Documents/Duplex%20Sequencing/ILP%20Semester%202,%202025?csf=1&web=1&e=xoUv7y)
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- [Link to technical diaries](https://wehieduau.sharepoint.com/:f:/r/sites/StudentInternGroupatWEHI/Shared%20Documents/Duplex%20Sequencing/Technical%20Diaries%20Semester%202,%202025?csf=1&web=1&e=d9noTY)

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