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Update Dockerfile
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Dockerfile

Lines changed: 4 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,9 @@
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# Use the miniconda container
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FROM continuumio/miniconda3:main
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# Version argument (set during build)
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ARG LONGREADSUM_VERSION
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WORKDIR /app
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RUN apt-get update
@@ -14,6 +17,6 @@ RUN conda config --add channels jannessp
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RUN conda create -n longreadsum python=3.9
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RUN echo "conda activate longreadsum" >> ~/.bashrc
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SHELL ["/bin/bash", "--login", "-c"]
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RUN conda install -n longreadsum -c wglab -c conda-forge -c jannessp -c bioconda longreadsum=1.5.0 && conda clean -afy
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RUN conda install -n longreadsum -c wglab -c conda-forge -c jannessp -c bioconda longreadsum=${LONGREADSUM_VERSION} && conda clean -afy
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ENTRYPOINT ["conda", "run", "--no-capture-output", "-n", "longreadsum", "longreadsum"]

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