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Add knowledge level and agent type
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‎cohd/cohd_trapi_15.py‎

Lines changed: 73 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -572,7 +572,7 @@ def _interpret_query(self):
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self._invalid_query_response = response, 200
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return self._valid_query, self._invalid_query_response
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575-
# If client specifies unsupported set_interpretation (ALL or MANY), respond with error code
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# If client specifies unsupported set_interpretation (ALL or MANY), respond with error code
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if concept_1_qnode.get('set_interpretation') in CohdTrapi150.unsupported_set_interpretation or \
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concept_2_qnode.get('set_interpretation') in CohdTrapi150.unsupported_set_interpretation:
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self._valid_query = False
@@ -1410,6 +1410,18 @@ def _add_kg_edge(self, node_1, node_2, cohd_result):
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'value_type_id': 'EDAM:data_1048', # Database ID
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'attribute_source': CohdTrapi._INFORES_ID,
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'description': f'Dataset ID within {CohdTrapi._SERVICE_NAME}'
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},
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# Knowledge Level
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{
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'attribute_type_id': 'biolink:knowledge_level',
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'value': 'statistical_association',
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'attribute_source': CohdTrapi._INFORES_ID
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},
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# Agent Type
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{
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'attribute_type_id': 'biolink:agent_type',
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'value': 'computational_model',
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'attribute_source': CohdTrapi._INFORES_ID
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}
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]
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},
@@ -1447,6 +1459,18 @@ def _add_kg_edge(self, node_1, node_2, cohd_result):
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'value_type_id': 'EDAM:data_1048', # Database ID
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'attribute_source': CohdTrapi._INFORES_ID,
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'description': f'Dataset ID within {CohdTrapi._SERVICE_NAME}'
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},
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# Knowledge Level
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{
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'attribute_type_id': 'biolink:knowledge_level',
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'value': 'statistical_association',
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'attribute_source': CohdTrapi._INFORES_ID
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},
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# Agent Type
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{
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'attribute_type_id': 'biolink:agent_type',
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'value': 'computational_model',
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'attribute_source': CohdTrapi._INFORES_ID
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}
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]
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},
@@ -1491,6 +1515,18 @@ def _add_kg_edge(self, node_1, node_2, cohd_result):
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'value_type_id': 'EDAM:data_1048', # Database ID
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'attribute_source': CohdTrapi._INFORES_ID,
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'description': f'Dataset ID within {CohdTrapi._SERVICE_NAME}'
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},
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# Knowledge Level
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{
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'attribute_type_id': 'biolink:knowledge_level',
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'value': 'statistical_association',
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'attribute_source': CohdTrapi._INFORES_ID
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},
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# Agent Type
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{
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'attribute_type_id': 'biolink:agent_type',
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'value': 'computational_model',
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'attribute_source': CohdTrapi._INFORES_ID
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}
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]
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},
@@ -1542,6 +1578,18 @@ def _add_kg_edge(self, node_1, node_2, cohd_result):
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'value_type_id': 'EDAM:data_1048', # Database ID
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'attribute_source': CohdTrapi._INFORES_ID,
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'description': f'Dataset ID within {CohdTrapi._SERVICE_NAME}'
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},
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# Knowledge Level
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{
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'attribute_type_id': 'biolink:knowledge_level',
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'value': 'statistical_association',
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'attribute_source': CohdTrapi._INFORES_ID
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},
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# Agent Type
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{
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'attribute_type_id': 'biolink:agent_type',
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'value': 'computational_model',
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'attribute_source': CohdTrapi._INFORES_ID
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}
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]
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},
@@ -1585,8 +1633,32 @@ def _add_kg_edge(self, node_1, node_2, cohd_result):
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'value_type_id': 'EDAM:data_1048', # Database ID
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'attribute_source': CohdTrapi._INFORES_ID,
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'description': f'Dataset ID within {CohdTrapi._SERVICE_NAME}'
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},
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# Knowledge Level
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{
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'attribute_type_id': 'biolink:knowledge_level',
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'value': 'statistical_association',
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'attribute_source': CohdTrapi._INFORES_ID
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},
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# Agent Type
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{
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'attribute_type_id': 'biolink:agent_type',
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'value': 'computational_model',
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'attribute_source': CohdTrapi._INFORES_ID
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}
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]
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},
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# Knowledge Level
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{
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'attribute_type_id': 'biolink:knowledge_level',
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'value': 'statistical_association',
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'attribute_source': CohdTrapi._INFORES_ID
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},
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# Agent Type
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{
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'attribute_type_id': 'biolink:agent_type',
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'value': 'computational_model',
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'attribute_source': CohdTrapi._INFORES_ID
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}
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]
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# From calculation of chi_square

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