Making pictures of functional clusters

[KirstieJane]

The lovely @miykael is working on a wrapper using nipy and nilearn to show orthogonal slices of an MNI brain with cluster overlays.

Input will be a 3D statisical map in nifti format.

Output will be individual images for each cluster (optionally showing cross hairs) along with a summary figure of all the images. Additionally a csv file with the atlas region and stats for each cluster will be created.

Current work is removing dependency on FSL by transitioning to nilearn.

[miykael]

I think this issue can be closed. First step for functional cluster pictures is done :-)

[lrq3000]

If this is still ongoing, I have published a code that might help, see #32