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DESCRIPTION
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Package: MMINP
Title: Microbe-Metabolite Interactions-Based Metabolic Profiles Predictor
Version: 0.1.1
Authors@R:
c(person(given = "Wenli",
family = "Tang",
role = c("aut", "cre"),
email = "1071429394@qq.com",
comment = c(ORCID = "0000-0002-6141-5854")),
person(given = "Guangchuang", family = "Yu",
email = "guangchuangyu@gmail.com",
role = c("aut", "ths"),
comment = c(ORCID = "0000-0002-6485-8781")))
Description:
Implements a computational framework to predict microbial community-based
metabolic profiles with 'O2PLS' model. It provides procedures of model
training and prediction. Paired microbiome and metabolome data are needed
for modeling, and the trained model can be applied to predict metabolites
of analogous environments using new microbial feature abundances.
Depends: R (>= 4.1.0)
Imports:
magrittr (>= 2.0.1),
OmicsPLS (>= 2.0.2),
utils,
stats,
forecast
Suggests:
rmarkdown,
knitr,
prettydoc,
testthat (>= 3.0.0)
License: GPL (>= 3.0)
URL: https://github.com/YuLab-SMU/MMINP
BugReports: https://github.com/YuLab-SMU/MMINP/issues
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Config/testthat/edition: 3
VignetteBuilder: knitr