feat(fixes): shebangs and cmd-line standards

Author: ocehugo

aodntools/timeseries_products/aggregated_timeseries.py

@@ -422,17 +422,17 @@ def main_aggregator(files_to_agg, var_to_agg, site_code, input_dir='', output_di
 if __name__ == "__main__":
 
     parser = argparse.ArgumentParser(description="Aggregate ONE variable from ALL instruments from ALL deployments from ONE site")
-    parser.add_argument('-site', dest='site_code', help='site code, like NRMMAI',  required=True)
-    parser.add_argument('-var', dest='varname', help='variable to aggregate, like TEMP', required=True)
-    parser.add_argument('-files', dest='filenames',
+    parser.add_argument('--site', dest='site_code', help='site code, like NRMMAI',  required=True)
+    parser.add_argument('--var', dest='varname', help='variable to aggregate, like TEMP', required=True)
+    parser.add_argument('--files', dest='filenames',
                         help='name of the file that contains the source URLs (relative to inpath, if given)',
                         required=True)
-    parser.add_argument('-indir', dest='input_dir', help='base path of input files', default='', required=False)
-    parser.add_argument('-outdir', dest='output_dir', help='path where the result file will be written. Default ./',
+    parser.add_argument('--indir', dest='input_dir', help='base path of input files', default='', required=False)
+    parser.add_argument('--outdir', dest='output_dir', help='path where the result file will be written. Default ./',
                         default='./', required=False)
-    parser.add_argument('-download_url', dest='download_url', help='path to the download_url_prefix',
+    parser.add_argument('--download_url', dest='download_url', help='path to the download_url_prefix',
                         default='', required=False)
-    parser.add_argument('-opendap_url', dest='opendap_url', help='path to the opendap_url_prefix',
+    parser.add_argument('--opendap_url', dest='opendap_url', help='path to the opendap_url_prefix',
                         default='', required=False)
     args = parser.parse_args()
 

aodntools/timeseries_products/gridded_timeseries.py

@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
 import numpy as np
 import bisect
 import argparse
@@ -319,16 +320,16 @@ def grid_variable(input_file, VoI, depth_bins=None, max_separation=50, depth_bin
 
 if __name__ == "__main__":
     parser = argparse.ArgumentParser(description="Gridded time series: interpolate ONE variable from ALL instruments from ALL deployments from ONE site into 1hr timestamps and fixed depth bins")
-    parser.add_argument('-var', dest='var', help='name of the variable to concatenate. Like TEMP, PSAL', default='TEMP', required=False)
-    parser.add_argument('-file', dest='filename', help='name of the Hourly Time Series Product file that contains the data', default=None, required=False)
-    parser.add_argument('-depth_bins', dest='depth_bins', help='list of depth where the VoI will be interpolated', default=None, nargs='+', required=False)
-    parser.add_argument('-max_separation', dest='max_separation', help='maximum difference between instruments to allow interpolation', default=50, required=False)
-    parser.add_argument('-depth_bins_increment', dest='depth_bins_increment', help='increment in meters for the automatic generated depth bins', default=10, required=False)
-    parser.add_argument('-indir', dest='input_dir', help='base path of input file. Default .', default='.',
+    parser.add_argument('--var', dest='var', help='name of the variable to concatenate. Like TEMP, PSAL', default='TEMP', required=False)
+    parser.add_argument('--file', dest='filename', help='name of the Hourly Time Series Product file that contains the data', default=None, required=False)
+    parser.add_argument('--depth_bins', dest='depth_bins', help='list of depth where the VoI will be interpolated', default=None, nargs='+', required=False)
+    parser.add_argument('--max_separation', dest='max_separation', help='maximum difference between instruments to allow interpolation', default=50, required=False)
+    parser.add_argument('--depth_bins_increment', dest='depth_bins_increment', help='increment in meters for the automatic generated depth bins', default=10, required=False)
+    parser.add_argument('--indir', dest='input_dir', help='base path of input file. Default .', default='.',
                         required=False)
-    parser.add_argument('-outdir', dest='output_dir', help='path where the result file will be written. Default .',
+    parser.add_argument('--outdir', dest='output_dir', help='path where the result file will be written. Default .',
                         default='.', required=False)
-    parser.add_argument('-config', dest='config_file', help='JSON configuration file', default=None, required=False)
+    parser.add_argument('--config', dest='config_file', help='JSON configuration file', default=None, required=False)
     args = parser.parse_args()
 
     if args.config_file:

aodntools/timeseries_products/velocity_aggregated_timeseries.py

@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
 import os
 import sys
 import tempfile

aodntools/timeseries_products/velocity_hourly_timeseries.py

@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
 import argparse
 import json
 import os
@@ -319,14 +320,14 @@ def velocity_hourly_aggregated(files_to_agg, site_code, input_dir='', output_dir
 if __name__ == "__main__":
 
     parser = argparse.ArgumentParser(description="Concatenate X,Y,Z velocity variables from ALL instruments from ALL deployments from ONE site")
-    parser.add_argument('-site', dest='site_code', help='site code, like NRMMAI',  required=True)
-    parser.add_argument('-files', dest='filenames', help='name of the file that contains the source URLs', required=True)
-    parser.add_argument('-indir', dest='input_dir', help='base path of input files', default='', required=False)
-    parser.add_argument('-outdir', dest='output_dir', help='path where the result file will be written. Default ./',
+    parser.add_argument('--site', dest='site_code', help='site code, like NRMMAI',  required=True)
+    parser.add_argument('--files', dest='filenames', help='name of the file that contains the source URLs', required=True)
+    parser.add_argument('--indir', dest='input_dir', help='base path of input files', default='', required=False)
+    parser.add_argument('--outdir', dest='output_dir', help='path where the result file will be written. Default ./',
                         default='./', required=False)
-    parser.add_argument('-download_url', dest='download_url', help='path to the download_url_prefix',
+    parser.add_argument('--download_url', dest='download_url', help='path to the download_url_prefix',
                         default='', required=False)
-    parser.add_argument('-opendap_url', dest='opendap_url', help='path to the opendap_url_prefix',
+    parser.add_argument('--opendap_url', dest='opendap_url', help='path to the opendap_url_prefix',
                         default='', required=False)
 
     args = parser.parse_args()