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Import PartitionedParallelSampling code from BAT.jl
Co-authored-by: Vasyl Hafych <vasilgafich@gmail.com>
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‎.codecov.yml‎

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# comment: false

‎.github/workflows/CompatHelper.yml‎

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name: CompatHelper
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on:
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schedule:
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- cron: 0 0 * * *
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workflow_dispatch:
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jobs:
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CompatHelper:
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runs-on: ubuntu-latest
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steps:
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- name: "Add the General registry via Git"
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run: |
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import Pkg
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ENV["JULIA_PKG_SERVER"] = ""
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Pkg.Registry.add("General")
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shell: julia --color=yes {0}
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- name: "Install CompatHelper"
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run: |
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import Pkg
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name = "CompatHelper"
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uuid = "aa819f21-2bde-4658-8897-bab36330d9b7"
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version = "3"
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Pkg.add(; name, uuid, version)
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shell: julia --color=yes {0}
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- name: "Run CompatHelper"
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run: |
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import CompatHelper
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CompatHelper.main()
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shell: julia --color=yes {0}
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env:
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GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
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COMPATHELPER_PRIV: ${{ secrets.DOCUMENTER_KEY }}
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# COMPATHELPER_PRIV: ${{ secrets.COMPATHELPER_PRIV }}

‎.github/workflows/TagBot.yml‎

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name: TagBot
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on:
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issue_comment:
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types:
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- created
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workflow_dispatch:
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jobs:
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TagBot:
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if: github.event_name == 'workflow_dispatch' || github.actor == 'JuliaTagBot'
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runs-on: ubuntu-latest
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steps:
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- uses: JuliaRegistries/TagBot@v1
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with:
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token: ${{ secrets.GITHUB_TOKEN }}
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ssh: ${{ secrets.DOCUMENTER_KEY }}

‎.github/workflows/ci.yml‎

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name: CI
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on:
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push:
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branches:
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- main
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- dev
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- 'releases/**'
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tags: '*'
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pull_request:
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release:
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concurrency:
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# Skip intermediate builds: always.
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# Cancel intermediate builds: only if it is a pull request build.
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group: ${{ github.workflow }}-${{ github.ref }}
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cancel-in-progress: ${{ startsWith(github.ref, 'refs/pull/') }}
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jobs:
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test:
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name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }}
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runs-on: ${{ matrix.os }}
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continue-on-error: ${{ matrix.version == 'nightly' }}
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strategy:
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fail-fast: false
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matrix:
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version:
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- '1.6'
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- '1'
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# - 'nightly'
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os:
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- ubuntu-latest
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arch:
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- x64
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include:
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- version: 1
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os: ubuntu-latest
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arch: x86
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- version: 1
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os: macOS-latest
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arch: x64
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- version: 1
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os: windows-latest
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arch: x64
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steps:
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- uses: actions/checkout@v2
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- uses: julia-actions/setup-julia@latest
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with:
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version: ${{ matrix.version }}
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arch: ${{ matrix.arch }}
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- name: Cache artifacts
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uses: actions/cache@v2
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env:
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cache-name: cache-artifacts
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with:
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path: ~/.julia/artifacts
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key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/Project.toml') }}
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restore-keys: |
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${{ runner.os }}-test-${{ env.cache-name }}-
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${{ runner.os }}-test-
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${{ runner.os }}-
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- name: update_manifest
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run: julia --project=. -E 'import Pkg; Pkg.update()'
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- uses: julia-actions/julia-buildpkg@latest
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env:
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PYTHON: 'Conda'
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- uses: julia-actions/julia-runtest@latest
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with:
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coverage: ${{ matrix.version == '1' && matrix.os == 'ubuntu-latest' && matrix.arch == 'x64' }}
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- uses: julia-actions/julia-processcoverage@v1
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if: matrix.version == '1' && matrix.os == 'ubuntu-latest' && matrix.arch == 'x64'
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- uses: codecov/codecov-action@v1
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if: matrix.version == '1' && matrix.os == 'ubuntu-latest' && matrix.arch == 'x64'
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with:
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file: lcov.info
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docs:
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name: Documentation
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v2
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- uses: julia-actions/setup-julia@latest
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with:
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version: '1'
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- name: Cache artifacts
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uses: actions/cache@v2
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env:
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cache-name: cache-artifacts
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with:
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path: ~/.julia/artifacts
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key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/docs/Project.toml') }}
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restore-keys: |
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${{ runner.os }}-test-${{ env.cache-name }}-
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${{ runner.os }}-test-
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${{ runner.os }}-
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- name: update_manifest
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run: julia --project=. -E 'import Pkg; Pkg.update()'
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- uses: julia-actions/julia-buildpkg@latest
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env:
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PYTHON: 'Conda'
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- uses: julia-actions/julia-docdeploy@latest
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env:
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GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
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# Needed due to https://github.com/JuliaDocs/Documenter.jl/issues/1177
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DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }}
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GKSwstype: 'nul'

‎.gitignore‎

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.DS_Store
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*.jl.cov
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*.jl.*.cov
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*.jl.mem
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.ipynb_checkpoints
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.vscode
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test/Manifest.toml

‎CITATION.bib‎

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@article{Hafych:2008.03098,
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author = {Hafych, Vasyl and Eller, Philipp and Caldwell, Allen and Schulz, Oliver},
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title = {Parallelizing MCMC Sampling via Space Partitioning},
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year = {2018},
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month = {8},
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archiveprefix = {arXiv},
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eprint = {2008.03098},
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primaryclass = {stat.CO},
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}

‎LICENSE.md‎

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The PartitionedParallelSampling.jl package is licensed under the MIT "Expat" License:
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> Copyright (c) 2020-2022:
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> Vasyl Hafych <vasilgafich@gmail.com>,
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> Oliver Schulz <oschulz@mpp.mpg.de>,
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> and contributors
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>
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> Permission is hereby granted, free of charge, to any person obtaining a copy
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> of this software and associated documentation files (the "Software"), to deal
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> in the Software without restriction, including without limitation the rights
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> to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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> copies of the Software, and to permit persons to whom the Software is
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> furnished to do so, subject to the following conditions:
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>
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> The above copyright notice and this permission notice shall be included in all
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> copies or substantial portions of the Software.
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>
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> THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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> IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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> FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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> AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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> LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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> OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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> SOFTWARE.
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>

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