Whilst running oncodriveclustl with the default genome option, the genome download gets stuck at 100% (after the INFO root: Computing signature... message is printed). The process does not finish, and the downloaded file is not decompressed.
Environment:
- python 3.11, bgdata 2.0.4, oncodriveclustl 1.1.4 (current version from this repo);
- python 3.10, bgdata 2.0.4, oncodriveclustl 1.1.3 (last version installable from PyPi).
This solved the issue for me (in environment 2, not tested in environment 1)
Before running the programme:
- delete the bgdata hg19 directory;
- run
bgdata get datasets/genomereference/hg19;
- manually create the
hg19.master file if missing.
Whilst running oncodriveclustl with the default genome option, the genome download gets stuck at 100% (after the
INFO root: Computing signature...message is printed). The process does not finish, and the downloaded file is not decompressed.Environment:
This solved the issue for me (in environment 2, not tested in environment 1)
Before running the programme:
bgdata get datasets/genomereference/hg19;hg19.masterfile if missing.