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Update Marcin Joachimiak's profile information
Updated contact information and added optional fields for SEO and social links. Enhanced the description of Dr. Marcin P. Joachimiak's work and contributions.
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people/marcin-joachimiak/index.md

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@@ -4,13 +4,32 @@ title: Marcin P. Joachimiak
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active: yes
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position: Staff Researcher and Developer
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background: PhD, Biophysics, University of California San Francisco
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email: mjoachimiak
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email: mjoachimiak@lbl.gov
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image: marcin.jpeg
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github: http://github.com/realmarcin
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orcid: http://orcid.org/0000-0001-8175-045X
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github: https://github.com/realmarcin
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orcid: https://orcid.org/0000-0001-8175-045X
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linkedin: https://www.linkedin.com/in/marcin-joachimiak-810245/
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scholar: https://scholar.google.com/citations?user=zSlIlYQAAAAJ&hl=en&oi=ao
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scholar: https://scholar.google.com/citations?user=zSlIlYQAAAAJ
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twitter: https://twitter.com/realmarcin
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# Optional fields that many Jekyll themes/SEO helpers will read:
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description: "Dr. Marcin P. Joachimiak — LBNL researcher leading KG-Microbe and CultureBotAI; AI/ML, bioontologies, and knowledge graphs."
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permalink: /people/marcin-joachimiak/
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# Add social links that can be emitted as JSON-LD via your layout/plugin:
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same_as:
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- https://github.com/realmarcin
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- https://orcid.org/0000-0001-8175-045X
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- https://scholar.google.com/citations?user=zSlIlYQAAAAJ
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- https://www.linkedin.com/in/marcin-joachimiak-810245/
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- https://twitter.com/realmarcin
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# Optional topical signals used by some templates:
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knows_about:
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- knowledge graphs
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- bioontologies
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- graph learning
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- large language models
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- microbial cultivation media
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---
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My background is in computational biology in the areas of functional genomics and systems biology, where I develop algorithms and machine learning methods, with a focus on bioontologies, knowledge graphs, large language models, and graph learning.
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I lead the LBNL ([CultureBot](https://culturebotai.github.io/), [github](https://github.com/CultureBotAI)) project to predict growth conditions for microbes using knowledge graphs and graph learning [KG-Microbe](https://github.com/Knowledge-Graph-Hub/kg-microbe), I also lead the D4D Working Group in the NIH Bridge2AI [Datasheets for Datasets](https://github.com/bridge2ai/data-sheets-schema/tree/main) effort and contribute to several BBOP AI-based methods ([TALISMAN](https://github.com/monarch-initiative/talisman), [OntoGPT](https://github.com/monarch-initiative/ontogpt)) and BBOP projects including: [Bridge2AI]([/project/bridge2ai](https://bridge2ai.org/standards-core/#:~:text=The%20Bridge2AI%20Standards%20Core%20aims,across%20Bridge2AI%20Data%20Generation%20Projects.)https://bridge2ai.org/standards-core/#:~:text=The%20Bridge2AI%20Standards%20Core%20aims,across%20Bridge2AI%20Data%20Generation%20Projects), [KG-Hub]([/project/kg-hub](https://kghub.org/)), [KG-COVID-19](/project/kg-covid-19).
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**Dr. Marcin P. Joachimiak** is a computational biologist working across functional genomics and systems biology, developing algorithms and machine-learning methods with a focus on **bioontologies**, **knowledge graphs**, **large language models**, and **graph learning**.
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I lead the LBNL **[CultureBot](https://culturebotai.github.io/)** program (see **[CultureBotAI on GitHub](https://github.com/CultureBotAI)**) to predict **microbial growth conditions** using knowledge graphs and graph learning—most centrally the **[KG-Microbe knowledge graph](https://github.com/Knowledge-Graph-Hub/kg-microbe)**. I also lead the D4D Working Group in the NIH Bridge2AI **[Datasheets for Datasets](https://github.com/bridge2ai/data-sheets-schema/tree/main)** effort and contribute to BBOP AI methods such as **[TALISMAN](https://github.com/monarch-initiative/talisman)** and **[OntoGPT](https://github.com/monarch-initiative/ontogpt)**, as well as BBOP projects including **[Bridge2AI Standards Core](https://bridge2ai.org/standards-core/)**, **[KG-Hub](https://kghub.org/)**, and **[KG-COVID-19](/project/kg-covid-19)**.

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