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Merge pull request #53 from bigbio/dev
Added support for DIA-NN version 2.1.0
2 parents 467280d + f096815 commit 898e935

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Lines changed: 2 additions & 2 deletions

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quantmsutils/diann/diann2mztab.py

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -373,7 +373,7 @@ def diann_version(self) -> str:
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return diann_version_id
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def validate_diann_version(self) -> None:
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supported_diann_versions = ["1.8.1", "2.0", "2.0.1", "2.0.2"]
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supported_diann_versions = ["1.8.1", "2.0", "2.0.1", "2.0.2", "2.1.0"]
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if self.diann_version not in supported_diann_versions:
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raise ValueError(f"Unsupported DIANN version {self.diann_version}")
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@@ -472,7 +472,7 @@ def main_report_df(self, qvalue_threshold: float) -> pd.DataFrame:
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"Precursor.Quantity",
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"Global.PG.Q.Value",
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]
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if "2.0" not in self.diann_version:
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if self.diann_version.startswith("1."):
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report = pd.read_csv(
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self.report, sep="\t", header=0, usecols=remain_cols + ["MS2.Scan"]
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)

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