Merge pull request #58 from biosimulations/improve-user-qol

Improve user QOL

Author: Ezequiel-Valencia

…i/api/client/api/simulations/__init__.py …e_api/api/client/api/compute/__init__.pycompose_api/api/client/api/simulations/__init__.py renamed to compose_api/api/client/api/compute/__init__.py compose_api/api/client/api/simulations/__init__.py renamed to compose_api/api/client/api/compute/__init__.py

@@ -34,7 +34,7 @@ def _get_kwargs(
 
     _kwargs: dict[str, Any] = {
         "method": "post",
-        "url": "/tools/copasi",
+        "url": "/curated/copasi",
         "params": params,
     }
 

…ent/api/simulators/get_processes_list.py …client/api/compute/get_processes_list.pycompose_api/api/client/api/simulators/get_processes_list.py renamed to compose_api/api/client/api/compute/get_processes_list.py compose_api/api/client/api/simulators/get_processes_list.py renamed to compose_api/api/client/api/compute/get_processes_list.py

@@ -34,7 +34,7 @@ def _get_kwargs(
 
     _kwargs: dict[str, Any] = {
         "method": "post",
-        "url": "/tools/tellurium",
+        "url": "/curated/tellurium",
         "params": params,
     }
 

…ent/api/simulators/get_simulator_list.py …client/api/compute/get_simulator_list.pycompose_api/api/client/api/simulators/get_simulator_list.py renamed to compose_api/api/client/api/compute/get_simulator_list.py compose_api/api/client/api/simulators/get_simulator_list.py renamed to compose_api/api/client/api/compute/get_simulator_list.py

@@ -0,0 +1 @@
+"""Contains endpoint functions for accessing the API"""

…/client/api/simulators/get_steps_list.py …api/client/api/compute/get_steps_list.pycompose_api/api/client/api/simulators/get_steps_list.py renamed to compose_api/api/client/api/compute/get_steps_list.py compose_api/api/client/api/simulators/get_steps_list.py renamed to compose_api/api/client/api/compute/get_steps_list.py

@@ -13,17 +13,17 @@
 
 def _get_kwargs(
     *,
-    experiment_id: str,
+    simulation_id: int,
 ) -> dict[str, Any]:
     params: dict[str, Any] = {}
 
-    params["experiment_id"] = experiment_id
+    params["simulation_id"] = simulation_id
 
     params = {k: v for k, v in params.items() if v is not UNSET and v is not None}
 
     _kwargs: dict[str, Any] = {
         "method": "get",
-        "url": "/core/simulation/run/results/file",
+        "url": "/results/simulation/results/file",
         "params": params,
     }
 
@@ -60,12 +60,12 @@ def _build_response(
 def sync_detailed(
     *,
     client: Union[AuthenticatedClient, Client],
-    experiment_id: str,
+    simulation_id: int,
 ) -> Response[Union[Any, HTTPValidationError]]:
     """Get simulation results as a zip file
 
     Args:
-        experiment_id (str):
+        simulation_id (int):
 
     Raises:
         errors.UnexpectedStatus: If the server returns an undocumented status code and Client.raise_on_unexpected_status is True.
@@ -76,7 +76,7 @@ def sync_detailed(
     """
 
     kwargs = _get_kwargs(
-        experiment_id=experiment_id,
+        simulation_id=simulation_id,
     )
 
     response = client.get_httpx_client().request(
@@ -89,12 +89,12 @@ def sync_detailed(
 def sync(
     *,
     client: Union[AuthenticatedClient, Client],
-    experiment_id: str,
+    simulation_id: int,
 ) -> Optional[Union[Any, HTTPValidationError]]:
     """Get simulation results as a zip file
 
     Args:
-        experiment_id (str):
+        simulation_id (int):
 
     Raises:
         errors.UnexpectedStatus: If the server returns an undocumented status code and Client.raise_on_unexpected_status is True.
@@ -106,19 +106,19 @@ def sync(
 
     return sync_detailed(
         client=client,
-        experiment_id=experiment_id,
+        simulation_id=simulation_id,
     ).parsed
 
 
 async def asyncio_detailed(
     *,
     client: Union[AuthenticatedClient, Client],
-    experiment_id: str,
+    simulation_id: int,
 ) -> Response[Union[Any, HTTPValidationError]]:
     """Get simulation results as a zip file
 
     Args:
-        experiment_id (str):
+        simulation_id (int):
 
     Raises:
         errors.UnexpectedStatus: If the server returns an undocumented status code and Client.raise_on_unexpected_status is True.
@@ -129,7 +129,7 @@ async def asyncio_detailed(
     """
 
     kwargs = _get_kwargs(
-        experiment_id=experiment_id,
+        simulation_id=simulation_id,
     )
 
     response = await client.get_async_httpx_client().request(**kwargs)
@@ -140,12 +140,12 @@ async def asyncio_detailed(
 async def asyncio(
     *,
     client: Union[AuthenticatedClient, Client],
-    experiment_id: str,
+    simulation_id: int,
 ) -> Optional[Union[Any, HTTPValidationError]]:
     """Get simulation results as a zip file
 
     Args:
-        experiment_id (str):
+        simulation_id (int):
 
     Raises:
         errors.UnexpectedStatus: If the server returns an undocumented status code and Client.raise_on_unexpected_status is True.
@@ -158,6 +158,6 @@ async def asyncio(
     return (
         await asyncio_detailed(
             client=client,
-            experiment_id=experiment_id,
+            simulation_id=simulation_id,
         )
     ).parsed

…pi/api/client/api/simulators/__init__.py …e_api/api/client/api/curated/__init__.pycompose_api/api/client/api/simulators/__init__.py renamed to compose_api/api/client/api/curated/__init__.py compose_api/api/client/api/simulators/__init__.py renamed to compose_api/api/client/api/curated/__init__.py

@@ -24,7 +24,7 @@ def _get_kwargs(
 
     _kwargs: dict[str, Any] = {
         "method": "get",
-        "url": "/core/simulation/run/status",
+        "url": "/results/simulation/status",
         "params": params,
     }