nextflow/multiqc_config.yaml at g2 · bixBeta/nextflow · GitHub

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data_format: 'yaml'
show_analysis_time: False
show_analysis_paths: False
theme_style: light

report_header_info:
  - Contact E-mail: 'trex_info@cornell.edu'
  - Reference Genome: !ENV "${MQC_GENOME}"
custom_logo_url: https://trex.biotech.cornell.edu/
plots_force_interactive: True


skip_generalstats: true

remove_sections:
  - fastp-duprates
  - fastp-insert-size
  - fastp-seq-quality
  - fastp-seq-content-gc
  - fastp-seq-content-n


report_section_order:
  fastp:
    order: 100
  star:
    order: 90

table_columns_visible:
  star-total_reads: true
  star-mapped : true
  star-uniquely_mapped: true
  star-uniquely_mapped_percent : true
  star-mapped_percent : false
  star-num_annotated_splices : false
  star-num_annotated_splices : false
  star-num_annotated_splices : false
  star-deletion_length : false
  star-deletion_length : false
  star-insertion_length : false
  star-avg_mapped_read_length: false
  star-mismatch_rate : false
  star-deletion_rate : false
  star-insertion_rate : false


table_columns_name:
  star-total_reads: "Total Reads -- Post Trimming"
  star-mapped  : "Total Mapped Reads"
  star-uniquely_mapped : "Uniquely Mapped Reads"
  star-uniquely_mapped_percent : "% Uniquely Mapped Reads"


fastp:
  s_name_filenames: true