CHANGELOG.md

Changelog

6.8.1 (2026-01-05)

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Merged pull requests:

• fix(rpextractsink): handle cmpd info not found from URL #48 (breakthewall)

6.8.0 (2025-12-16)

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Merged pull requests:

• feat(rpscore): create output dir if does not exist #47 (breakthewall)
• feat(rpthermo): create output folder if does not exist #46 (breakthewall)
• feat(rpviz): Toggle panels #45 (breakthewall)
• chore(rpextractsink.py): retry connecting to MetNetX when it fails #43 (breakthewall)

6.7.2 (2025-11-04)

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6.7.1 (2025-10-23)

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6.7.0 (2025-10-23)

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Closed issues:

• rpextractsink missing argument in the add_argument() #41

6.6.6 (2025-10-16)

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6.6.5 (2025-10-12)

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6.6.4 (2025-10-02)

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6.6.3 (2025-09-30)

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6.6.2 (2025-09-30)

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6.6.1 (2025-09-30)

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6.6.0 (2025-09-30)

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Closed issues:

• Call to UniProt in PartsGenie is broken #34
• Declaring channels for the packages in the environment #33

Merged pull requests:

• improve cofactor handling within rpviz #39 (tduigou)

6.5.0 (2023-11-29)

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6.4.1 (2023-11-21)

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6.4.0 (2023-11-20)

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6.3.3 (2023-11-16)

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6.3.2 (2023-10-25)

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6.3.1 (2023-10-23)

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6.3.0 (2023-10-20)

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Merged pull requests:

• merge #31 (breakthewall)
• rpfba: Remove medium feature #29 (guillaume-gricourt)

6.2.3 (2023-03-17)

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6.2.2 (2023-02-14)

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6.2.1 (2023-02-09)

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6.2.0 (2023-01-30)

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6.1.0 (2023-01-10)

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Merged pull requests:

• rptools.rpviz #28 (niraito)

6.0.2 (2023-01-04)

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6.0.1 (2022-11-17)

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6.0.0 (2022-11-16)

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Closed issues:

• Compounds not included in the Sink #26
• bounds rpthermo bug #25

5.13.1 (2022-06-23)

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5.13.0 (2022-06-21)

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5.12.3 (2022-04-17)

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Closed issues:

• Compound names #24

5.12.2 (2022-04-14)

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Merged pull requests:

• Typo #23 (niraito)

5.12.1 (2022-01-28)

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5.12.0 (2022-01-17)

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Merged pull requests:

• Feat rplibs rpsbml #22 (guillaume-gricourt)

5.11.1 (2021-12-16)

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5.11.0 (2021-12-09)

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5.10.0 (2021-12-07)

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5.9.2 (2021-11-10)

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5.9.1 (2021-11-08)

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5.9.0 (2021-11-08)

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Merged pull requests:

• Feat rpfba minimal medium #21 (guillaume-gricourt)

5.8.2 (2021-10-28)

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Merged pull requests:

• Fix rpathway tests #20 (guillaume-gricourt)
• Feat medium #19 (guillaume-gricourt)
• Update rplibs.rpSBML.speciesMatchWith - function,doc,test #18 (guillaume-gricourt)

5.7.5 (2021-10-19)

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Merged pull requests:

• fix(rpviz): change scale color #17 (tduigou)

5.7.2 (2021-10-05)

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Merged pull requests:

• doc: update shinx files and readme #16 (oTelle)
• Feat docs #15 (oTelle)
• Feat rpreport #14 (oTelle)
• Feat rpreport #12 (oTelle)
• fix: update set up conda packages in dev mode #11 (oTelle)
• fix: update set up conda packages in dev mode #10 (oTelle)
• fix: set up conda packages in dev mode #9 (oTelle)
• Feat docs #8 (oTelle)
• Dev : rpreport now works with new rplibs version #7 (oTelle)

4.6.0 (2021-06-02)

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Fixed bugs:

• We can't install rptools in 3.9 python environment. #5

Closed issues:

• Use >> instead of >> in brsynth:smiles SBML annotations #3
• get reactions number of a pathway #2
• toDict() output : No 'step_id' key in rxn element #1

Merged pull requests:

• Feat rpreport #6 (oTelle)
• Introducing rpreport module #4 (oTelle)

* This Changelog was automatically generated by github_changelog_generator