Run pipeline

github-actions[bot] · github-actions[bot] · commit 0c5ed3234d2d · 2025-07-12T16:01:18.000Z
diff --git a/.calkit/env-locks/py.yml b/.calkit/env-locks/py.yml
@@ -4,14 +4,14 @@ dependencies:
   - _libgcc_mutex=0.1=conda_forge
   - _openmp_mutex=4.5=2_gnu
   - alsa-lib=1.2.14=hb9d3cd8_0
-  - brotli=1.1.0=hb9d3cd8_2
-  - brotli-bin=1.1.0=hb9d3cd8_2
+  - brotli=1.1.0=hb9d3cd8_3
+  - brotli-bin=1.1.0=hb9d3cd8_3
   - bzip2=1.0.8=h4bc722e_7
-  - ca-certificates=2025.4.26=hbd8a1cb_0
+  - ca-certificates=2025.7.9=hbd8a1cb_0
   - cairo=1.18.4=h3394656_0
   - contourpy=1.3.2=py312h68727a3_0
   - cycler=0.12.1=pyhd8ed1ab_1
-  - cyrus-sasl=2.1.27=h54b06d7_7
+  - cyrus-sasl=2.1.28=hd9c7081_0
   - dbus=1.16.2=h3c4dab8_0
   - double-conversion=3.3.1=h5888daf_0
   - font-ttf-dejavu-sans-mono=2.37=hab24e00_0
@@ -21,60 +21,60 @@ dependencies:
   - fontconfig=2.15.0=h7e30c49_1
   - fonts-conda-ecosystem=1=0
   - fonts-conda-forge=1=0
-  - fonttools=4.58.1=py312h178313f_0
+  - fonttools=4.58.5=py312h178313f_0
   - freetype=2.13.3=ha770c72_1
-  - graphite2=1.3.13=h59595ed_1003
+  - graphite2=1.3.14=h5888daf_0
   - harfbuzz=11.2.1=h3beb420_0
   - icu=75.1=he02047a_0
   - keyutils=1.6.1=h166bdaf_0
-  - kiwisolver=1.4.8=py312h84d6215_0
+  - kiwisolver=1.4.8=py312h68727a3_1
   - krb5=1.21.3=h659f571_0
   - lcms2=2.17=h717163a_0
-  - ld_impl_linux-64=2.43=h712a8e2_4
+  - ld_impl_linux-64=2.44=h1423503_1
   - lerc=4.0.0=h0aef613_1
-  - libblas=3.9.0=31_h59b9bed_openblas
-  - libbrotlicommon=1.1.0=hb9d3cd8_2
-  - libbrotlidec=1.1.0=hb9d3cd8_2
-  - libbrotlienc=1.1.0=hb9d3cd8_2
-  - libcblas=3.9.0=31_he106b2a_openblas
-  - libclang-cpp20.1=20.1.6=default_h1df26ce_0
-  - libclang13=20.1.6=default_he06ed0a_0
-  - libcups=2.3.3=h4637d8d_4
+  - libblas=3.9.0=32_h59b9bed_openblas
+  - libbrotlicommon=1.1.0=hb9d3cd8_3
+  - libbrotlidec=1.1.0=hb9d3cd8_3
+  - libbrotlienc=1.1.0=hb9d3cd8_3
+  - libcblas=3.9.0=32_he106b2a_openblas
+  - libclang-cpp20.1=20.1.8=default_hddf928d_0
+  - libclang13=20.1.8=default_ha444ac7_0
+  - libcups=2.3.3=hb8b1518_5
   - libdeflate=1.24=h86f0d12_0
-  - libdrm=2.4.124=hb9d3cd8_0
+  - libdrm=2.4.125=hb9d3cd8_0
   - libedit=3.1.20250104=pl5321h7949ede_0
   - libegl=1.7.0=ha4b6fd6_2
   - libexpat=2.7.0=h5888daf_0
   - libffi=3.4.6=h2dba641_1
   - libfreetype=2.13.3=ha770c72_1
   - libfreetype6=2.13.3=h48d6fc4_1
-  - libgcc=15.1.0=h767d61c_2
-  - libgcc-ng=15.1.0=h69a702a_2
-  - libgfortran=15.1.0=h69a702a_2
-  - libgfortran5=15.1.0=hcea5267_2
+  - libgcc=15.1.0=h767d61c_3
+  - libgcc-ng=15.1.0=h69a702a_3
+  - libgfortran=15.1.0=h69a702a_3
+  - libgfortran5=15.1.0=hcea5267_3
   - libgl=1.7.0=ha4b6fd6_2
   - libglib=2.84.2=h3618099_0
   - libglvnd=1.7.0=ha4b6fd6_2
   - libglx=1.7.0=ha4b6fd6_2
-  - libgomp=15.1.0=h767d61c_2
+  - libgomp=15.1.0=h767d61c_3
   - libiconv=1.18=h4ce23a2_1
   - libjpeg-turbo=3.1.0=hb9d3cd8_0
-  - liblapack=3.9.0=31_h7ac8fdf_openblas
-  - libllvm20=20.1.6=he9d0ab4_0
-  - liblzma=5.8.1=hb9d3cd8_1
-  - libnsl=2.0.1=hd590300_0
+  - liblapack=3.9.0=32_h7ac8fdf_openblas
+  - libllvm20=20.1.8=hecd9e04_0
+  - liblzma=5.8.1=hb9d3cd8_2
+  - libnsl=2.0.1=hb9d3cd8_1
   - libntlm=1.8=hb9d3cd8_0
-  - libopenblas=0.3.29=pthreads_h94d23a6_0
+  - libopenblas=0.3.30=pthreads_h94d23a6_0
   - libopengl=1.7.0=ha4b6fd6_2
-  - libpciaccess=0.18=hd590300_0
-  - libpng=1.6.47=h943b412_0
+  - libpciaccess=0.18=hb9d3cd8_0
+  - libpng=1.6.50=h943b412_0
   - libpq=17.5=h27ae623_0
-  - libsqlite=3.50.0=hee588c1_0
-  - libstdcxx=15.1.0=h8f9b012_2
-  - libstdcxx-ng=15.1.0=h4852527_2
+  - libsqlite=3.50.2=hee844dc_2
+  - libstdcxx=15.1.0=h8f9b012_3
+  - libstdcxx-ng=15.1.0=h4852527_3
   - libtiff=4.7.0=hf01ce69_5
   - libuuid=2.38.1=h0b41bf4_0
-  - libwebp-base=1.5.0=h851e524_0
+  - libwebp-base=1.6.0=hd42ef1d_0
   - libxcb=1.17.0=h8a09558_0
   - libxcrypt=4.4.36=hd590300_1
   - libxkbcommon=1.10.0=h65c71a3_0
@@ -83,44 +83,44 @@ dependencies:
   - libzlib=1.3.1=hb9d3cd8_2
   - matplotlib=3.10.3=py312h7900ff3_0
   - matplotlib-base=3.10.3=py312hd3ec401_0
-  - munkres=1.1.4=pyh9f0ad1d_0
+  - munkres=1.1.4=pyhd8ed1ab_1
   - ncurses=6.5=h2d0b736_3
-  - numpy=2.2.6=py312h72c5963_0
+  - numpy=2.3.1=py312h6cf2f7f_0
   - openjpeg=2.5.3=h5fbd93e_0
   - openldap=2.6.10=he970967_0
-  - openssl=3.5.0=h7b32b05_1
+  - openssl=3.5.1=h7b32b05_0
   - packaging=25.0=pyh29332c3_1
-  - pandas=2.3.0=py312hf9745cd_0
+  - pandas=2.3.1=py312hf79963d_0
   - pcre2=10.45=hc749103_0
-  - pillow=11.2.1=py312h80c1187_0
+  - pillow=11.3.0=py312h80c1187_0
   - pip=25.1.1=pyh8b19718_0
-  - pixman=0.46.0=h29eaf8c_0
+  - pixman=0.46.2=h29eaf8c_0
   - pthread-stubs=0.4=hb9d3cd8_1002
   - pyparsing=3.2.3=pyhd8ed1ab_1
   - pyside6=6.9.1=py312hdb827e4_0
   - python=3.12.11=h9e4cc4f_0_cpython
-  - python-dateutil=2.9.0.post0=pyhff2d567_1
+  - python-dateutil=2.9.0.post0=pyhe01879c_2
   - python-tzdata=2025.2=pyhd8ed1ab_0
   - python_abi=3.12=7_cp312
   - pytz=2025.2=pyhd8ed1ab_0
   - qhull=2020.2=h434a139_5
-  - qt6-main=6.9.1=h0384650_0
+  - qt6-main=6.9.1=h0384650_1
   - readline=8.2=h8c095d6_2
   - setuptools=80.9.0=pyhff2d567_0
   - six=1.17.0=pyhd8ed1ab_0
   - tk=8.6.13=noxft_hd72426e_102
   - tornado=6.5.1=py312h66e93f0_0
   - tzdata=2025b=h78e105d_0
   - unicodedata2=16.0.0=py312h66e93f0_0
-  - wayland=1.23.1=h3e06ad9_1
+  - wayland=1.24.0=h3e06ad9_0
   - wheel=0.45.1=pyhd8ed1ab_1
-  - xcb-util=0.4.1=hb711507_2
+  - xcb-util=0.4.1=h4f16b4b_2
   - xcb-util-cursor=0.1.5=hb9d3cd8_0
   - xcb-util-image=0.4.0=hb711507_2
   - xcb-util-keysyms=0.4.1=hb711507_0
   - xcb-util-renderutil=0.3.10=hb711507_0
   - xcb-util-wm=0.4.2=hb711507_0
-  - xkeyboard-config=2.44=hb9d3cd8_0
+  - xkeyboard-config=2.45=hb9d3cd8_0
   - xorg-libice=1.1.2=hb9d3cd8_0
   - xorg-libsm=1.2.6=he73a12e_0
   - xorg-libx11=1.8.12=h4f16b4b_0
diff --git a/.calkit/env-locks/tex.json b/.calkit/env-locks/tex.json
@@ -1,71 +1,27 @@
-[
-    {
-        "RepoTags": [
-            "texlive/texlive:latest-full"
-        ],
-        "Parent": "",
-        "Comment": "buildkit.dockerfile.v0",
-        "Created": "2025-05-11T07:29:25.753894634Z",
-        "Author": "",
-        "Config": {
-            "Hostname": "",
-            "Domainname": "",
-            "User": "",
-            "AttachStdin": false,
-            "AttachStdout": false,
-            "AttachStderr": false,
-            "Tty": false,
-            "OpenStdin": false,
-            "StdinOnce": false,
-            "Env": [
-                "PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin",
-                "LANG=C.UTF-8",
-                "LC_ALL=C.UTF-8",
-                "TEXLIVE_INSTALL_NO_CONTEXT_CACHE=1",
-                "NOPERLDOC=1",
-                "DEBIAN_FRONTEND=noninteractive"
-            ],
-            "Cmd": [
-                "bash"
-            ],
-            "Image": "",
-            "Volumes": null,
-            "WorkingDir": "/workdir",
-            "Entrypoint": null,
-            "OnBuild": null,
-            "Labels": {
-                "org.opencontainers.image.authors": "Island of TeX",
-                "org.opencontainers.image.source": "https://gitlab.com/islandoftex/images/texlive/-/blob/master/Dockerfile",
-                "org.opencontainers.image.url": "https://gitlab.com/islandoftex/images/texlive"
-            }
-        },
-        "Architecture": "amd64",
-        "Os": "linux",
-        "Size": 5098898686,
-        "GraphDriver": {
-            "Data": {
-                "LowerDir": "/var/lib/docker/overlay2/5bc28b3c4561fe6f5f4789695d8f2ff38b4afe63974172a7f5df84a27b710344/diff:/var/lib/docker/overlay2/f7c7e4d9e24106b03ce2a0e9c6317055d01215575e01edf098feadabf34bc1f7/diff:/var/lib/docker/overlay2/444232db72dbfbdab8797facff8e0be6ffc1170c1ca5169832cb048aa5742578/diff:/var/lib/docker/overlay2/3c34c3638bd6a514d2422edf36f44fd91ac895c27816eb777362f90c1e2ec0d3/diff:/var/lib/docker/overlay2/d8d0510a677910886c2cf3d64b98bb49e17aa3ecd634e4d1d96037c8d6955174/diff:/var/lib/docker/overlay2/4f741c4e3c373acbeda93205286ca87b225b107950b9935c1650fdaec07e1222/diff:/var/lib/docker/overlay2/8bb6274cba798042344cd51470a5d22837d6a9bdc82980ba463ec9748510e54f/diff:/var/lib/docker/overlay2/c5c5aada03ec75964aef8dd5512d3fa17fb929f310cba1daa587748bc71a3ab4/diff",
-                "MergedDir": "/var/lib/docker/overlay2/42a06a773dcef7bcc5c0f02ef86ed0b16af04fb6db6d29370050e25fbb76d920/merged",
-                "UpperDir": "/var/lib/docker/overlay2/42a06a773dcef7bcc5c0f02ef86ed0b16af04fb6db6d29370050e25fbb76d920/diff",
-                "WorkDir": "/var/lib/docker/overlay2/42a06a773dcef7bcc5c0f02ef86ed0b16af04fb6db6d29370050e25fbb76d920/work"
-            },
-            "Name": "overlay2"
-        },
-        "RootFS": {
-            "Type": "layers",
-            "Layers": [
-                "sha256:e34100b5ade5263e40d8c20bb8ccf79395f40b91df4c98cc15d8e054c394d562",
-                "sha256:04cfdf16bd0dd805426e964fc340876a2a200d0eefc5b90b2489c1478c110fa4",
-                "sha256:0bd654080aa3c910ab918b3d1b765ff2c109cee2812dcb26eb90cee366da7cf6",
-                "sha256:5f70bf18a086007016e948b04aed3b82103a36bea41755b6cddfaf10ace3c6ef",
-                "sha256:ae9a7ced9cc5ad671cdfcfc60b478a5037759d7e15cbb107409b852abedbf2fc",
-                "sha256:687d1879490fec7a67d8785d6a51620165a31a62698ad55fa39117cc616e013b",
-                "sha256:a7bae0a2e696be2c17c9ace1fd26c8887c608d6403ecc769ad02352a06b013c3",
-                "sha256:84705f8c61963468105a8748746e7a7cde08415bc79e90434ca6fa481aa9bb8f",
-                "sha256:2d3e39f031d41a5dad8649704ef6f72eb80f968c65bb3b1b28fe8929dd5fbc68"
-            ]
-        },
-        "DockerfileMD5": null,
-        "DepsMD5s": {}
-    }
-]
+{
+    "RepoTags": [
+        "texlive/texlive:latest-full"
+    ],
+    "RepoDigests": [
+        "texlive/texlive@sha256:9217582309e77b37da602fdfb2bcefcbd067c30b209cff5efc86a76371a43c65"
+    ],
+    "Architecture": "amd64",
+    "Os": "linux",
+    "Size": 5157750415,
+    "RootFS": {
+        "Type": "layers",
+        "Layers": [
+            "sha256:607439488d7a362b12df6b9e5d685ef34f0167c3c49485b1e1ae923913decf3c",
+            "sha256:ce2a84c58d04d50bbdbfdf76c577b5b8e8d428d81afaa53b643db39ae5261dde",
+            "sha256:72ffa73a698bf7430ff0890321804e834f1067156b415e5daae8fef9f557015f",
+            "sha256:5f70bf18a086007016e948b04aed3b82103a36bea41755b6cddfaf10ace3c6ef",
+            "sha256:b5b588b262136e16e8c78a131d023cc4114f1bbc36da180a68d37ddd48d10ce8",
+            "sha256:88b3c32a60de95a33eb58e9b1a392f70bd665d6cc98f4d725959215816790d8b",
+            "sha256:f8ffe090b87ed10b8363accb7c3e33b7b6c56b46926f98f111617b6d6f903079",
+            "sha256:72bb80a98d03926c3aab05655040108a0c2a48e982a48f89fa64897203a710b3",
+            "sha256:ce071cca50588d6156e39f72809740a7f77851adc1b292e28e4f8b68014a54ef"
+        ]
+    },
+    "DockerfileMD5": null,
+    "DepsMD5s": {}
+}
diff --git a/dvc.lock b/dvc.lock
@@ -5,37 +5,37 @@ stages:
     deps:
     - path: .calkit/env-locks/py.yml
       hash: md5
-      md5: e3d91ff577fd05c4d927d6c889cca264
-      size: 4553
+      md5: 38e8da790ec212e66f9b5ddc63bf3b5f
+      size: 4549
     - path: scripts/collect-data.py
       hash: md5
       md5: eeab1328ac4a9df2ef2452d32c1e6cce
       size: 424
     outs:
     - path: data/raw/data.csv
       hash: md5
-      md5: 87767dd77cd6da58b0909a8f402b8d62
-      size: 43683
+      md5: 66f57f77fb212dd615e994297db23722
+      size: 43649
   plot-voltage:
     cmd: calkit xenv -n py --no-check -- python scripts/plot-voltage.py
     deps:
     - path: .calkit/env-locks/py.yml
       hash: md5
-      md5: e3d91ff577fd05c4d927d6c889cca264
-      size: 4553
+      md5: 38e8da790ec212e66f9b5ddc63bf3b5f
+      size: 4549
     - path: data/raw/data.csv
       hash: md5
-      md5: 87767dd77cd6da58b0909a8f402b8d62
-      size: 43683
+      md5: 66f57f77fb212dd615e994297db23722
+      size: 43649
     - path: scripts/plot-voltage.py
       hash: md5
       md5: 087a567a0c0f6199a908399013d564a1
       size: 297
     outs:
     - path: figures/voltage-time-series.png
       hash: md5
-      md5: b7378cadeabb02f564c934e1d2749481
-      size: 43464
+      md5: 25a34b441aa5e79c3761afe2031d0bde
+      size: 44419
   copy-figures-to-paper-dir:
     cmd: cp -r figures paper/figures
     deps:
@@ -52,16 +52,16 @@ stages:
       nfiles: 2
   build-paper:
     cmd: calkit xenv -n tex --no-check -- latexmk -cd -interaction=nonstopmode 
-      -pdf paper/paper.tex
+      -silent -synctex=1 -pdf paper/paper.tex
     deps:
     - path: .calkit/env-locks/tex.json
       hash: md5
-      md5: d9062570504c158a91ee94916efba78a
-      size: 3729
+      md5: ec2fbcc5185d5fbc737bb43aefcc2469
+      size: 1171
     - path: figures
       hash: md5
-      md5: a77f21985bd647a010596d719977d503.dir
-      size: 43489
+      md5: 03d5d3a604ff8f9f9d6cdd3b1fdb6e25.dir
+      size: 44444
       nfiles: 2
     - path: paper/paper.tex
       hash: md5
@@ -70,8 +70,8 @@ stages:
     outs:
     - path: paper/paper.pdf
       hash: md5
-      md5: 00eff68bd3ab398006da8128741597e3
-      size: 91362
+      md5: 8632c57f0ec5033d2dce454daefa061c
+      size: 94579
   _check_env_py:
     cmd: calkit check conda-env --file environment.yml --output 
       .calkit/env-locks/py.yml
@@ -94,8 +94,7 @@ stages:
       md5: b04cd12c7a8313853c8739a55f6320fe
       size: 2791
   _check-env-py:
-    cmd: calkit check conda-env --file environment.yml --output 
-      .calkit/env-locks/py.yml
+    cmd: calkit check environment --name py
     deps:
     - path: environment.yml
       hash: md5
@@ -104,13 +103,12 @@ stages:
     outs:
     - path: .calkit/env-locks/py.yml
       hash: md5
-      md5: e3d91ff577fd05c4d927d6c889cca264
-      size: 4553
+      md5: 38e8da790ec212e66f9b5ddc63bf3b5f
+      size: 4549
   _check-env-tex:
-    cmd: calkit check docker-env texlive/texlive:latest-full -o 
-      .calkit/env-locks/tex.json
+    cmd: calkit check environment --name tex
     outs:
     - path: .calkit/env-locks/tex.json
       hash: md5
-      md5: d9062570504c158a91ee94916efba78a
-      size: 3729
+      md5: ec2fbcc5185d5fbc737bb43aefcc2469
+      size: 1171
diff --git a/dvc.yaml b/dvc.yaml
