Run pipeline

Author: github-actions[bot]

.calkit/env-locks/py.yml

@@ -7,9 +7,9 @@ dependencies:
   - brotli=1.1.0=hb9d3cd8_3
   - brotli-bin=1.1.0=hb9d3cd8_3
   - bzip2=1.0.8=h4bc722e_7
-  - ca-certificates=2025.7.9=hbd8a1cb_0
+  - ca-certificates=2025.8.3=hbd8a1cb_0
   - cairo=1.18.4=h3394656_0
-  - contourpy=1.3.2=py312h68727a3_0
+  - contourpy=1.3.3=py312hd9148b4_1
   - cycler=0.12.1=pyhd8ed1ab_1
   - cyrus-sasl=2.1.28=hd9c7081_0
   - dbus=1.16.2=h3c4dab8_0
@@ -21,93 +21,93 @@ dependencies:
   - fontconfig=2.15.0=h7e30c49_1
   - fonts-conda-ecosystem=1=0
   - fonts-conda-forge=1=0
-  - fonttools=4.58.5=py312h178313f_0
+  - fonttools=4.59.0=py312h8a5da7c_0
   - freetype=2.13.3=ha770c72_1
-  - graphite2=1.3.14=h5888daf_0
-  - harfbuzz=11.2.1=h3beb420_0
+  - graphite2=1.3.14=hecca717_1
+  - harfbuzz=11.3.3=hbb57e21_0
   - icu=75.1=he02047a_0
   - keyutils=1.6.1=h166bdaf_0
   - kiwisolver=1.4.8=py312h68727a3_1
   - krb5=1.21.3=h659f571_0
   - lcms2=2.17=h717163a_0
   - ld_impl_linux-64=2.44=h1423503_1
   - lerc=4.0.0=h0aef613_1
-  - libblas=3.9.0=32_h59b9bed_openblas
+  - libblas=3.9.0=33_h59b9bed_openblas
   - libbrotlicommon=1.1.0=hb9d3cd8_3
   - libbrotlidec=1.1.0=hb9d3cd8_3
   - libbrotlienc=1.1.0=hb9d3cd8_3
-  - libcblas=3.9.0=32_he106b2a_openblas
+  - libcblas=3.9.0=33_he106b2a_openblas
   - libclang-cpp20.1=20.1.8=default_hddf928d_0
   - libclang13=20.1.8=default_ha444ac7_0
   - libcups=2.3.3=hb8b1518_5
   - libdeflate=1.24=h86f0d12_0
   - libdrm=2.4.125=hb9d3cd8_0
   - libedit=3.1.20250104=pl5321h7949ede_0
   - libegl=1.7.0=ha4b6fd6_2
-  - libexpat=2.7.0=h5888daf_0
+  - libexpat=2.7.1=hecca717_0
   - libffi=3.4.6=h2dba641_1
   - libfreetype=2.13.3=ha770c72_1
   - libfreetype6=2.13.3=h48d6fc4_1
-  - libgcc=15.1.0=h767d61c_3
-  - libgcc-ng=15.1.0=h69a702a_3
-  - libgfortran=15.1.0=h69a702a_3
-  - libgfortran5=15.1.0=hcea5267_3
+  - libgcc=15.1.0=h767d61c_4
+  - libgcc-ng=15.1.0=h69a702a_4
+  - libgfortran=15.1.0=h69a702a_4
+  - libgfortran5=15.1.0=hcea5267_4
   - libgl=1.7.0=ha4b6fd6_2
-  - libglib=2.84.2=h3618099_0
+  - libglib=2.84.3=hf39c6af_0
   - libglvnd=1.7.0=ha4b6fd6_2
   - libglx=1.7.0=ha4b6fd6_2
-  - libgomp=15.1.0=h767d61c_3
+  - libgomp=15.1.0=h767d61c_4
   - libiconv=1.18=h4ce23a2_1
   - libjpeg-turbo=3.1.0=hb9d3cd8_0
-  - liblapack=3.9.0=32_h7ac8fdf_openblas
+  - liblapack=3.9.0=33_h7ac8fdf_openblas
   - libllvm20=20.1.8=hecd9e04_0
   - liblzma=5.8.1=hb9d3cd8_2
   - libnsl=2.0.1=hb9d3cd8_1
   - libntlm=1.8=hb9d3cd8_0
-  - libopenblas=0.3.30=pthreads_h94d23a6_0
+  - libopenblas=0.3.30=pthreads_h94d23a6_1
   - libopengl=1.7.0=ha4b6fd6_2
   - libpciaccess=0.18=hb9d3cd8_0
-  - libpng=1.6.50=h943b412_0
+  - libpng=1.6.50=h421ea60_1
   - libpq=17.5=h27ae623_0
-  - libsqlite=3.50.2=hee844dc_2
-  - libstdcxx=15.1.0=h8f9b012_3
-  - libstdcxx-ng=15.1.0=h4852527_3
+  - libsqlite=3.50.4=h0c1763c_0
+  - libstdcxx=15.1.0=h8f9b012_4
+  - libstdcxx-ng=15.1.0=h4852527_4
   - libtiff=4.7.0=hf01ce69_5
   - libuuid=2.38.1=h0b41bf4_0
   - libwebp-base=1.6.0=hd42ef1d_0
   - libxcb=1.17.0=h8a09558_0
   - libxcrypt=4.4.36=hd590300_1
   - libxkbcommon=1.10.0=h65c71a3_0
-  - libxml2=2.13.8=h4bc477f_0
-  - libxslt=1.1.39=h76b75d6_0
+  - libxml2=2.13.8=h04c0eec_1
+  - libxslt=1.1.43=h7a3aeb2_0
   - libzlib=1.3.1=hb9d3cd8_2
-  - matplotlib=3.10.3=py312h7900ff3_0
-  - matplotlib-base=3.10.3=py312hd3ec401_0
+  - matplotlib=3.10.5=py312h7900ff3_0
+  - matplotlib-base=3.10.5=py312he3d6523_0
   - munkres=1.1.4=pyhd8ed1ab_1
   - ncurses=6.5=h2d0b736_3
-  - numpy=2.3.1=py312h6cf2f7f_0
-  - openjpeg=2.5.3=h5fbd93e_0
+  - numpy=2.3.2=py312h33ff503_0
+  - openjpeg=2.5.3=h55fea9a_1
   - openldap=2.6.10=he970967_0
-  - openssl=3.5.1=h7b32b05_0
+  - openssl=3.5.2=h26f9b46_0
   - packaging=25.0=pyh29332c3_1
   - pandas=2.3.1=py312hf79963d_0
   - pcre2=10.45=hc749103_0
   - pillow=11.3.0=py312h80c1187_0
-  - pip=25.1.1=pyh8b19718_0
-  - pixman=0.46.2=h29eaf8c_0
+  - pip=25.2=pyh8b19718_0
+  - pixman=0.46.4=h537e5f6_0
   - pthread-stubs=0.4=hb9d3cd8_1002
-  - pyparsing=3.2.3=pyhd8ed1ab_1
+  - pyparsing=3.2.3=pyhe01879c_2
   - pyside6=6.9.1=py312hdb827e4_0
   - python=3.12.11=h9e4cc4f_0_cpython
   - python-dateutil=2.9.0.post0=pyhe01879c_2
   - python-tzdata=2025.2=pyhd8ed1ab_0
-  - python_abi=3.12=7_cp312
+  - python_abi=3.12=8_cp312
   - pytz=2025.2=pyhd8ed1ab_0
   - qhull=2020.2=h434a139_5
-  - qt6-main=6.9.1=h0384650_1
+  - qt6-main=6.9.1=h6ac528c_2
   - readline=8.2=h8c095d6_2
   - setuptools=80.9.0=pyhff2d567_0
-  - six=1.17.0=pyhd8ed1ab_0
+  - six=1.17.0=pyhe01879c_1
   - tk=8.6.13=noxft_hd72426e_102
   - tornado=6.5.1=py312h66e93f0_0
   - tzdata=2025b=h78e105d_0

.calkit/env-locks/tex.json

@@ -3,23 +3,23 @@
         "texlive/texlive:latest-full"
     ],
     "RepoDigests": [
-        "texlive/texlive@sha256:9217582309e77b37da602fdfb2bcefcbd067c30b209cff5efc86a76371a43c65"
+        "texlive/texlive@sha256:50cbe04f3d8deaa934ad58500eb088087897f8934aa4ff283f0dd0d9913060c6"
     ],
     "Architecture": "amd64",
     "Os": "linux",
-    "Size": 5157750415,
+    "Size": 5212914632,
     "RootFS": {
         "Type": "layers",
         "Layers": [
-            "sha256:607439488d7a362b12df6b9e5d685ef34f0167c3c49485b1e1ae923913decf3c",
-            "sha256:ce2a84c58d04d50bbdbfdf76c577b5b8e8d428d81afaa53b643db39ae5261dde",
-            "sha256:72ffa73a698bf7430ff0890321804e834f1067156b415e5daae8fef9f557015f",
+            "sha256:5ce2e09ce74c93c54460abe87dfbf53df28f85ff4098b11570480954fec94ff1",
+            "sha256:76029d00884870d5949eaee239be75ef962f6968df6ff6ec9ed5f9823ebb680f",
+            "sha256:bab4fac6f89ed2b202d5b55205f227ee2df615926f84eb4ab07b7de253c59f5b",
             "sha256:5f70bf18a086007016e948b04aed3b82103a36bea41755b6cddfaf10ace3c6ef",
-            "sha256:b5b588b262136e16e8c78a131d023cc4114f1bbc36da180a68d37ddd48d10ce8",
-            "sha256:88b3c32a60de95a33eb58e9b1a392f70bd665d6cc98f4d725959215816790d8b",
-            "sha256:f8ffe090b87ed10b8363accb7c3e33b7b6c56b46926f98f111617b6d6f903079",
-            "sha256:72bb80a98d03926c3aab05655040108a0c2a48e982a48f89fa64897203a710b3",
-            "sha256:ce071cca50588d6156e39f72809740a7f77851adc1b292e28e4f8b68014a54ef"
+            "sha256:c6cef71aed9b0a4fd3832ce9561643b00ab032e4b13885d38ffde1b50fca6951",
+            "sha256:5f7e65b08ae04201d6f95dc624f95b3757a2210e6727341fed9524832212ebbf",
+            "sha256:f4e5a6e76a68b9fa5984ce99d6b08d6e5632b4315bcb3d2f8f112973eab7634b",
+            "sha256:f77ecbe90296b4f5ce84ccfdfc4f78e378dc1d4842895eb7dcd8b6937ce067b3",
+            "sha256:f33b6625cfc6bdb7953773301900546a06a7d7b1103ef1064bb9fac43b6ebc56"
         ]
     },
     "DockerfileMD5": null,

.calkit/runs/2025-08-06T14-55-26-a58b5b05d3264994a6169eb9862e55c8.json

@@ -0,0 +1,94 @@
+{
+  "id": "a58b5b05d3264994a6169eb9862e55c8",
+  "system_id": "1c56626645d3e5c942fa36a3951a971a6fdd4007",
+  "start_time": "2025-08-06T14:55:26.144605+00:00",
+  "end_time": "2025-08-06T14:57:40.842812+00:00",
+  "targets": [],
+  "force": false,
+  "dvc_args": [],
+  "status": "completed",
+  "stages": {
+    "_check-env-py": {
+      "start_time": "2025-08-06T14:55:26.319000",
+      "end_time": "2025-08-06T14:56:02.533000",
+      "status": "completed"
+    },
+    "_check-env-tex": {
+      "start_time": "2025-08-06T14:56:02.533000",
+      "end_time": "2025-08-06T14:57:33.240000",
+      "status": "completed"
+    },
+    "collect-data": {
+      "start_time": "2025-08-06T14:57:33.240000",
+      "end_time": "2025-08-06T14:57:35.525000",
+      "status": "completed"
+    },
+    "plot-voltage": {
+      "start_time": "2025-08-06T14:57:35.525000",
+      "end_time": "2025-08-06T14:57:38.597000",
+      "status": "completed"
+    },
+    "build-paper": {
+      "start_time": "2025-08-06T14:57:38.597000"
+    }
+  },
+  "git_rev": "dc9f1b2c957c7bafb8b92c9e370dc03389f470b2",
+  "git_branch": "main",
+  "git_changed_files_before": [],
+  "git_staged_files_before": [],
+  "git_untracked_files_before": [
+    ".calkit/systems/1c56626645d3e5c942fa36a3951a971a6fdd4007.json"
+  ],
+  "git_changed_files_after": [
+    ".calkit/env-locks/py.yml",
+    ".calkit/env-locks/tex.json"
+  ],
+  "git_staged_files_after": [
+    "dvc.lock"
+  ],
+  "git_untracked_files_after": [
+    ".calkit/systems/1c56626645d3e5c942fa36a3951a971a6fdd4007.json"
+  ],
+  "dvc_status_before": {
+    "_check-env-py": [
+      "always changed"
+    ],
+    "_check-env-tex": [
+      "always changed"
+    ]
+  },
+  "dvc_data_status_before": {
+    "not_in_cache": [],
+    "not_in_remote": [],
+    "committed": {},
+    "uncommitted": {},
+    "untracked": [],
+    "unchanged": [
+      "paper/paper.pdf",
+      "figures/voltage-time-series.png",
+      "data/raw/data.csv"
+    ]
+  },
+  "dvc_status_after": {
+    "_check-env-py": [
+      "always changed"
+    ],
+    "_check-env-tex": [
+      "always changed"
+    ]
+  },
+  "dvc_data_status_after": {
+    "not_in_cache": [],
+    "not_in_remote": [],
+    "committed": {
+      "modified": [
+        "figures/voltage-time-series.png",
+        "paper/paper.pdf",
+        "data/raw/data.csv"
+      ]
+    },
+    "uncommitted": {},
+    "untracked": [],
+    "unchanged": []
+  }
+}

.calkit/systems/1c56626645d3e5c942fa36a3951a971a6fdd4007.json

@@ -0,0 +1,23 @@
+{
+  "os": "Linux",
+  "os_version": "6.11.0-1018-azure",
+  "python_version": "3.12.3",
+  "calkit_version": "0.26.12",
+  "calkit_git_rev": null,
+  "hostname": "pkrvmjbmru5nbw0",
+  "processor": "x86_64",
+  "platform": "Linux-6.11.0-1018-azure-x86_64-with-glibc2.39",
+  "machine": "x86_64",
+  "python_implementation": "CPython",
+  "python_compiler": "GCC 13.3.0",
+  "memory_gb": 15.620681762695312,
+  "cpu_count": 4,
+  "node_id": 136469676776427,
+  "docker_version": "Docker version 28.0.4, build b8034c0",
+  "conda_version": "conda 25.3.1",
+  "mamba_version": "2.1.1",
+  "uv_version": null,
+  "pixi_version": null,
+  "Rscript_version": null,
+  "id": "1c56626645d3e5c942fa36a3951a971a6fdd4007"
+}

dvc.lock

@@ -5,37 +5,37 @@ stages:
     deps:
     - path: .calkit/env-locks/py.yml
       hash: md5
-      md5: 38e8da790ec212e66f9b5ddc63bf3b5f
-      size: 4549
+      md5: 415abac783d7124497e523d78afb628a
+      size: 4547
     - path: scripts/collect-data.py
       hash: md5
       md5: eeab1328ac4a9df2ef2452d32c1e6cce
       size: 424
     outs:
     - path: data/raw/data.csv
       hash: md5
-      md5: 66f57f77fb212dd615e994297db23722
-      size: 43649
+      md5: c6403931056cff39c66438d1b8dc17b8
+      size: 43638
   plot-voltage:
     cmd: calkit xenv -n py --no-check -- python scripts/plot-voltage.py
     deps:
     - path: .calkit/env-locks/py.yml
       hash: md5
-      md5: 38e8da790ec212e66f9b5ddc63bf3b5f
-      size: 4549
+      md5: 415abac783d7124497e523d78afb628a
+      size: 4547
     - path: data/raw/data.csv
       hash: md5
-      md5: 66f57f77fb212dd615e994297db23722
-      size: 43649
+      md5: c6403931056cff39c66438d1b8dc17b8
+      size: 43638
     - path: scripts/plot-voltage.py
       hash: md5
       md5: 087a567a0c0f6199a908399013d564a1
       size: 297
     outs:
     - path: figures/voltage-time-series.png
       hash: md5
-      md5: 25a34b441aa5e79c3761afe2031d0bde
-      size: 44419
+      md5: 38086b513821aaa41b6b5bd2af71567a
+      size: 46700
   copy-figures-to-paper-dir:
     cmd: cp -r figures paper/figures
     deps:
@@ -56,12 +56,12 @@ stages:
     deps:
     - path: .calkit/env-locks/tex.json
       hash: md5
-      md5: ec2fbcc5185d5fbc737bb43aefcc2469
+      md5: 3a74b701e17d8cef01c6958e7fb9bf0c
       size: 1171
     - path: figures
       hash: md5
-      md5: 03d5d3a604ff8f9f9d6cdd3b1fdb6e25.dir
-      size: 44444
+      md5: dbdd5fb15cc447f44b204fa239c12463.dir
+      size: 46725
       nfiles: 2
     - path: paper/paper.tex
       hash: md5
@@ -70,8 +70,8 @@ stages:
     outs:
     - path: paper/paper.pdf
       hash: md5
-      md5: 8632c57f0ec5033d2dce454daefa061c
-      size: 94579
+      md5: 286a355ba0119bb7cdd6f8e5380b968f
+      size: 97242
   _check_env_py:
     cmd: calkit check conda-env --file environment.yml --output 
       .calkit/env-locks/py.yml
@@ -103,12 +103,12 @@ stages:
     outs:
     - path: .calkit/env-locks/py.yml
       hash: md5
-      md5: 38e8da790ec212e66f9b5ddc63bf3b5f
-      size: 4549
+      md5: 415abac783d7124497e523d78afb628a
+      size: 4547
   _check-env-tex:
     cmd: calkit check environment --name tex
     outs:
     - path: .calkit/env-locks/tex.json
       hash: md5
-      md5: ec2fbcc5185d5fbc737bb43aefcc2469
+      md5: 3a74b701e17d8cef01c6958e7fb9bf0c
       size: 1171