README.md

#pairwise-alignment Pairwise Alignment Learning Tool

##To-Do

• Install Browsersync
• Install autoprefixer
• Configure gulp
• Package input matrix css into a module partial
• Create js to dynamically create html for matrix
• Create js to read html matrix into an array
• Figure out how to handle trace back data
• Refactor Needleman-Wunsch Algorithm code into a specific function
• Add semiglobal and local options
• Create gulp sourcemap task for sass
• Add compare function
• Add display feedback function
• Create one page for
  • the tool itself (just redo the old tool with new stuff)
  • the holdmybeer (the page where user enter info and receives feedback)
• Improve traceback
  • fix semi global traceback
  • find all possible alignments
  • add arrows to cells
• Add place to enter result alignment by user
• Create Modes
  • Learning (guided mode)
  • Practice
    • Instant Feedback
    • Delayed Feedback
• Design UI/UX