pixi.toml

[workspace]
authors = ["Tim Treis <tim.treis@stud.uni-heidelberg.de>"]
channels = ["conda-forge"]
name = "Spatial-Workshop"
platforms = ["win-64", "linux-64", "osx-64", "osx-arm64"]
version = "0.1.0"

[dependencies]
python = "3.11.*"
jupyterlab = ">=4.4.10,<5"
ipywidgets = ">=7.6.0"
spatialdata = ">=0.5.0,<0.7"
# spatialdata-io = ">=0.5.1,<0.6"
spatialdata-plot = ">=0.2.13,<0.3"
scanpy = ">=1.11.5,<2"
squidpy = ">=1.6.5,<2"
napari = ">=0.5.0,<0.5.6"
napari-spatialdata = ">=0.5.4.post0,<0.6"
numpy = "*"
pandas = ">=2.3.3,<3"
matplotlib = ">=3.10.7,<4"
python-igraph = ">=1.0.0,<2"
leidenalg = ">=0.11.0,<0.12"
gdown = ">=5.2.0,<6"
pyqt = ">=5.15.11,<6"

[tasks]
kernel-install = "python -m ipykernel install --user --name spatial-workshop --display-name \"Spatial Workshop (HMS)\""
download-data = "python scripts/download_data.py"

[tasks.lab]
depends-on = ["kernel-install"]
cmd = "jupyter lab --ip=127.0.0.1 --port=8888 --ServerApp.token= --ServerApp.password= --ServerApp.disable_check_xsrf=True"