Switching to a proper biography and adding a couple of projects

Author: duncanwp

.github/workflows/jekyll.yml

@@ -0,0 +1,61 @@
+name: Deploy Jekyll site to Pages
+
+on:
+  # Runs on pushes targeting the default branch
+  push:
+    branches: ["master"]
+
+  # Allows you to run this workflow manually from the Actions tab
+  workflow_dispatch:
+
+# Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages
+permissions:
+  contents: read
+  pages: write
+  id-token: write
+
+# Allow only one concurrent deployment, skipping runs queued between the run in-progress and latest queued.
+# However, do NOT cancel in-progress runs as we want to allow these production deployments to complete.
+concurrency:
+  group: "pages"
+  cancel-in-progress: false
+
+jobs:
+  # Build job
+  build:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Setup Ruby
+        uses: ruby/setup-ruby@v1
+        with:
+          ruby-version: '3.1'
+          bundler-cache: true # runs 'bundle install' and caches installed gems automatically
+
+      - name: Setup Pages
+        id: pages
+        uses: actions/configure-pages@v5
+
+      - name: Build with Jekyll
+        # Outputs to the './_site' directory by default
+        run: bundle exec jekyll build --baseurl "${{ steps.pages.outputs.base_path }}"
+        env:
+          JEKYLL_ENV: production
+
+      - name: Upload artifact
+        # Automatically uploads an artifact from the './_site' directory by default
+        uses: actions/upload-pages-artifact@v3
+
+  # Deployment job
+  deploy:
+    environment:
+      name: github-pages
+      url: ${{ steps.deployment.outputs.page_url }}
+    runs-on: ubuntu-latest
+    needs: build
+    steps:
+      - name: Deploy to GitHub Pages
+        id: deployment
+        uses: actions/deploy-pages@v4

Gemfile

@@ -1,11 +1,16 @@
 source "https://rubygems.org"
 
-gem "github-pages", group: :jekyll_plugins
+# Use modern Jekyll instead of github-pages gem
+# Site will be built via GitHub Actions
+gem "jekyll", "~> 4.3"
 
 gem "tzinfo-data"
 gem "wdm", "~> 0.1.0" if Gem.win_platform?
 
-# If you have any plugins, put them here!
+# Theme
+gem "minimal-mistakes-jekyll"
+
+# Plugins
 group :jekyll_plugins do
   gem "jekyll-paginate"
   gem "jekyll-sitemap"
@@ -14,6 +19,10 @@ group :jekyll_plugins do
   gem "jemoji"
   gem "jekyll-include-cache"
   gem "jekyll-algolia"
+  gem "jekyll-scholar", "~> 7.2"
+  gem "jekyll-seo-tag"
 end
 
 gem "webrick", "~> 1.8"
+gem "csv"
+gem "base64"

_config.yml

@@ -13,7 +13,7 @@
 # Review documentation to determine if you should use `theme` or `remote_theme`
 # https://mmistakes.github.io/minimal-mistakes/docs/quick-start-guide/#installing-the-theme
 
-# theme                  : "minimal-mistakes-jekyll"
+theme                  : "minimal-mistakes-jekyll"
 # remote_theme           : "mmistakes/minimal-mistakes"
 minimal_mistakes_skin    : "default" # "air", "aqua", "contrast", "dark", "dirt", "neon", "mint", "plum", "sunrise"
 
@@ -238,6 +238,8 @@ plugins:
   - jekyll-gist
   - jekyll-feed
   - jekyll-include-cache
+  - jekyll-scholar
+  - jekyll-seo-tag
 
 # mimic GitHub Pages with --safe
 whitelist:

_data/publications.bib

@@ -16,11 +16,18 @@ intro:
 #   A flexible two-column Jekyll theme. Perfect for building personal sites, blogs, and portfolios.<br />
 #   <small><a href="https://github.com/mmistakes/minimal-mistakes/releases/tag/4.24.0">Latest release v4.24.0</a></small>
 feature_row:
-  - image_path: /assets/images/climatebench.png
-    alt: "Global temperature map"
-    title: "ClimateBench"
-    excerpt: "A benchmark dataset for the emulation of full-complexity climate models."
-    url: "/projects/climatebench_app/"
+  - image_path: /assets/images/jaxgcm_teaser.png
+    alt: "JAX-GCM differentiable climate model"
+    title: "JAX-GCM"
+    excerpt: "A fully differentiable climate model enabling ML-enhanced climate science and gradient-based optimization."
+    url: "/projects/jaxgcm/"
+    btn_class: "btn--primary"
+    btn_label: "Learn more"
+  - image_path: /assets/images/gaia_teaser.png
+    alt: "GAIA Initiative"
+    title: "GAIA Initiative"
+    excerpt: "Harnessing AI to understand, forecast, and steward Earth's complex systems through interdisciplinary collaboration."
+    url: "/projects/gaia/"
     btn_class: "btn--primary"
     btn_label: "Learn more"
   - image_path: /assets/images/shiptracks_small.jpg
@@ -30,6 +37,15 @@ feature_row:
     url: "/projects/shiptracks"
     btn_class: "btn--primary"
     btn_label: "Learn more"
+
+feature_row2:
+  - image_path: /assets/images/climatebench.png
+    alt: "Global temperature map"
+    title: "ClimateBench"
+    excerpt: "A benchmark dataset for the emulation of full-complexity climate models."
+    url: "/projects/climatebench_app/"
+    btn_class: "btn--primary"
+    btn_label: "Learn more"
   - image_path: /assets/images/emulator_schematic.svg
     alt: "Emulator schematic"
     title: "Model Emulation for Calibration"
@@ -45,6 +61,8 @@ feature_row:
 
 {% include feature_row %}
 
+{% include feature_row id="feature_row2" %}
+
 ## News
 
 {% assign sorted = site.news | sort: 'date' | reverse %}