Merge pull request #35 from dengzq1234/main

update new way to install ete4 manually

Author: dengzq1234

README.md

@@ -112,28 +112,28 @@ Check other tutorial scripts
 
 ### Manual installation
 #### Install ETE v4
-To install ETE you can follow these steps:
- - Download this repository (https://github.com/etetoolkit/ete/releases)
-  - Build and install ete4 from the repository's root directory with following command: 
-  ```
-  wget https://github.com/etetoolkit/ete/archive/refs/tags/4.1.0-beta.tar.gz
-  tar -zxvf 4.1.0-beta.tar.gz
-  cd ete-4.1.0-beta/
-  python setup.py install
-  ```
-  or 
-  ```
-  pip install https://github.com/etetoolkit/ete/archive/refs/tags/4.1.0-beta.tar.gz
-  ```
+Quick way
+```
+pip install https://github.com/etetoolkit/ete/archive/ete4.zip
+```
+For local development
+To install ETE in a local directory to help with the development, you can:
+
+- Clone this repository (git clone https://github.com/etetoolkit/ete.git)
+- Install dependecies
+  - If you are using conda: `conda install -c conda-forge cython bottle brotli numpy pyqt`
+  - Otherwise, you can install them with `pip install <dependencies>`
+  - Build and install ete4 from the repository's root directory: `pip install -e .`
+
 (In Linux there may be some cases where the gcc library must be installed, which can be done with `conda install -c conda-forge gcc_linux-64`)
 
 #### Install TreeProfiler
 Install dependencies
 ```
 # install BioPython, selenium, scipy via conda
-conda install -c conda-forge biopython selenium scipy
+conda install -c conda-forge biopython selenium scipy matplotlib
 # or pip
-pip install biopython selenium scipy
+pip install biopython selenium scipy matplotlib
 ```
 
 Install TreeProfiler