Init

Author: tom mcandrew

.github/workflows/deploy.yml

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+# This file was created automatically with `jupyter-book init --gh-pages` 🪄 💚
+# Ensure your GitHub Pages settings for this repository are set to deploy with **GitHub Actions**.
+
+name: Jupyter Book (via myst) GitHub Pages Deploy
+on:
+  push:
+    # Runs on pushes targeting the default branch
+    branches: [main]
+env:
+  # `BASE_URL` determines, relative to the root of the domain, the URL that your site is served from.
+  # E.g., if your site lives at `https://mydomain.org/myproject`, set `BASE_URL=/myproject`.
+  # If, instead, your site lives at the root of the domain, at `https://mydomain.org`, set `BASE_URL=''`.
+  BASE_URL: /${{ github.event.repository.name }}
+
+# Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages
+permissions:
+  contents: read
+  pages: write
+  id-token: write
+# Allow only one concurrent deployment, skipping runs queued between the run in-progress and latest queued.
+# However, do NOT cancel in-progress runs as we want to allow these production deployments to complete.
+concurrency:
+  group: 'pages'
+  cancel-in-progress: false
+jobs:
+  deploy:
+    environment:
+      name: github-pages
+      url: ${{ steps.deployment.outputs.page_url }}
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - name: Setup Pages
+        uses: actions/configure-pages@v3
+      - uses: actions/setup-node@v4
+        with:
+          node-version: 18.x
+      - name: Install Jupyter Book (via myst)
+        run: npm install -g jupyter-book
+      - name: Build HTML Assets
+        run: jupyter-book build --html
+      - name: Upload artifact
+        uses: actions/upload-pages-artifact@v3
+        with:
+          path: './_build/html'
+      - name: Deploy to GitHub Pages
+        id: deployment
+        uses: actions/deploy-pages@v4

ch1.ipynb

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+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "id": "21a6615c-b9eb-4081-a362-e0bbdf82590a",
+   "metadata": {},
+   "source": [
+    "# Chapter 1"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "4812cc2a-428d-4eee-aa2a-406a4b4d871e",
+   "metadata": {},
+   "source": [
+    "## Time series data versus IID data \n",
+    "\n",
+    "IID\n",
+    "Correlated over time \n",
+    "Markov assumption \n"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "f2aca56d-50c3-4bd0-a087-81cca8ad4d6b",
+   "metadata": {},
+   "source": [
+    "## Influenza-like illness"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "7614c9a3-efc5-4037-b68d-9a9d97bef067",
+   "metadata": {},
+   "source": [
+    "## COVID Community mobility"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "0ff18230-d314-4bd8-8033-99c15cd2636d",
+   "metadata": {},
+   "source": [
+    "## Mpox incidence"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "57dfd0e6-9805-4754-b774-738058c1fd2f",
+   "metadata": {},
+   "source": [
+    "## Correlation, Covariance, and the Corrolelogram"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "aa674e67-12ab-497d-bf4f-aa0c811b8e64",
+   "metadata": {},
+   "source": [
+    "## Smoothing methods"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "50c0eb5c-acb1-4099-8856-aafeadb90719",
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "e8d7b8b3-1680-4d53-ae30-4804f79d2868",
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "915fd2f8-fb4a-4937-aac0-09a36bef5785",
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "363ad686-aaf7-427d-9362-87cd366317c6",
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "8a31ece2-cbf6-499a-9cff-ae9061a08b56",
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "899076c1-dd9b-43f9-80a8-9111d06f3626",
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Python 3 (ipykernel)",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.12.3"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}