CHOIR/DESCRIPTION at main · corceslab/CHOIR · GitHub

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Package: CHOIR
Title: CHOIR - Cluster Hierachy Optimization by Iterative Random forests
Version: 0.3.0
Authors@R:
	person("Cathrine", "Sant", , "cathrine.sant@gladstone.ucsf.edu", role = c("aut", "cre"),
		comment = c(ORCID = "0000-0002-5821-9828"))
Description: CHOIR is a clustering algorithm for single-cell sequencing data. CHOIR applies a framework of permutation tests and random forest classifiers across a hierarchical clustering tree to statistically identify clusters that represent distinct populations.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.0
Suggests:
    ArchR,
    cluster,
    clv,
    countsplit,
    ggnewscale,
    knitr,
    Polychrome,
    rmarkdown,
    Signac,
    SingleCellExperiment
VignetteBuilder: knitr
Imports:
    BiocGenerics,
    bluster,
    dplyr,
    ggplot2,
    ggtree,
    harmony,
    magrittr,
    Matrix,
    methods,
    mrtree,
    plyr,
    progress,
    ranger,
    Seurat,
    spatstat.univar,
    stringr,
    tidyr
Remotes:
    pengminshi/mrtree