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about/publications/index.html

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<p>The following publications relied on DataJoint open-source software for data analysis.
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If your work uses DataJoint or DataJoint Elements, please cite the respective
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<a href="../citation/">manuscripts and RRIDs</a>.</p>
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<h2 id="2026">2026<a class="headerlink" href="#2026" title="Permanent link">&para;</a></h2>
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<ul>
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<li>Sun, X., Comrie, A. E., Kahn, A. E., Monroe, E. J., Joshi, A., Guidera, J. A., Denovellis, E. L., Krausz, T. A., Zhou, J., Thompson, P., Hernandez, J., Yorita, A., Haque, R., Berke, J. D., Daw, N. D. &amp; Frank, L. M. (2026). <a href="https://doi.org/10.64898/2026.01.01.697272">Meta-learning is expressed through altered prefrontal cortical dynamics</a>. <em>bioRxiv</em>.</li>
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<h2 id="2025">2025<a class="headerlink" href="#2025" title="Permanent link">&para;</a></h2>
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<ul>
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<li>Campagner, D., Bhagat, J., Lopes, G., Calcaterra, L., Pouget, A. G., Almeida, A., ... &amp; SWC GCNU Experimental Neuroethology Group. (2025). <a href="https://doi.org/10.1101/2025.07.31.664513">Aeon: an open-source platform to study the neural basis of ethological behaviours over naturalistic timescales</a>. <em>bioRxiv</em>.</li>
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<li>Celii, B., Papadopoulos, S., Ding, Z., Fahey, P. G., Wang, E., Papadopoulos, C., ... &amp; Reimer, J. (2025). <a href="https://doi.org/10.1038/s41586-025-08660-5">NEURD offers automated proofreading and feature extraction for connectomics</a>. <em>Nature</em>, 640(8058), 487-496.</li>
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<li>Coulter, M. E., Gillespie, A. K., Chu, J., Denovellis, E. L., Nguyen, T. T. K., Liu, D. F., Wadhwani, K., Sharma, B., Wang, K., Deng, X., Eden, U. T., Kemere, C. &amp; Frank, L. M. (2025). <a href="https://doi.org/10.1016/j.neuron.2024.12.023">Closed-loop modulation of remote hippocampal representations with neurofeedback</a>. <em>Neuron</em>, 113(6), 949-961.</li>
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<li>Ding, Z., Fahey, P.G., Papadopoulos, S., Wang, E.Y., Celii, B., Papadopoulos, C., Chang, A., Kunin, A.B., Tran, D., Fu, J. ... &amp; Tolias, A. S. (2025). <a href="https://doi.org/10.1038/s41586-025-08840-3">Functional connectomics reveals general wiring rule in mouse visual cortex</a>. <em>Nature</em>, 640(8058), 459-469.</li>
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<li>Huang, J.Y., Hess, M., Bajpai, A., Li, X., Hobson, L.N., Xu, A.J., Barton, S.J. and Lu, H.C.(2025). <a href="https://doi.org/10.1016/j.isci.2025.112104">From initial formation to developmental refinement: GABAergic inputs shape neuronal subnetworks in the primary somatosensory cortex</a>. <em>iScience</em>, 28(3).</li>
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</ul>
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<ul>
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<li>Joshi, A., Comrie, A. E., Bray, S., Mankili, A., Guidera, J. A., Nevers, R., Sun, X., Monroe, E., Kharazia, V., Ly, R., Astudillo Maya, D., Morales-Rodriguez, D., Yu, J., Kiseleva, A., Perez, V. &amp; Frank, L. M. (2025). <a href="https://doi.org/10.1101/2025.09.15.675587">Disruption of theta-timescale spiking impairs learning but spares hippocampal replay</a>. <em>bioRxiv</em>.</li>
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</ul>
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<ul>
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<li>Lee, K. H., Denovellis, E. L., Ly, R., Magland, J., Soules, J., Comrie, A. E., Gramling, D. P., Guidera, J. A., Nevers, R., Adenekan, P., Brozdowski, C., Bray, S. R., Monroe, E., Bak, J. H., Coulter, M. E., Sun, X., Broyles, E., Shin, D., Chiang, S., Holobetz, C., ... Frank, L. M. (2025). <a href="https://elifesciences.org/reviewed-preprints/108089">Spyglass: a data analysis framework for reproducible and shareable neuroscience research</a>. <em>eLife</em>.</li>
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how-to/demo_modules/__init__/index.html

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llms-full.txt

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# DataJoint Documentation (Full)
22

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Generated: 2026-02-06 17:48:49 UTC
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Generated: 2026-02-13 06:41:28 UTC
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[manuscripts and RRIDs](./citation.md).
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## 2026
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+ Sun, X., Comrie, A. E., Kahn, A. E., Monroe, E. J., Joshi, A., Guidera, J. A., Denovellis, E. L., Krausz, T. A., Zhou, J., Thompson, P., Hernandez, J., Yorita, A., Haque, R., Berke, J. D., Daw, N. D. & Frank, L. M. (2026). [Meta-learning is expressed through altered prefrontal cortical dynamics](https://doi.org/10.64898/2026.01.01.697272). *bioRxiv*.
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## 2025
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+ Campagner, D., Bhagat, J., Lopes, G., Calcaterra, L., Pouget, A. G., Almeida, A., ... & SWC GCNU Experimental Neuroethology Group. (2025). [Aeon: an open-source platform to study the neural basis of ethological behaviours over naturalistic timescales](https://doi.org/10.1101/2025.07.31.664513). *bioRxiv*.
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+ Celii, B., Papadopoulos, S., Ding, Z., Fahey, P. G., Wang, E., Papadopoulos, C., ... & Reimer, J. (2025). [NEURD offers automated proofreading and feature extraction for connectomics](https://doi.org/10.1038/s41586-025-08660-5). *Nature*, 640(8058), 487-496.
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+ Coulter, M. E., Gillespie, A. K., Chu, J., Denovellis, E. L., Nguyen, T. T. K., Liu, D. F., Wadhwani, K., Sharma, B., Wang, K., Deng, X., Eden, U. T., Kemere, C. & Frank, L. M. (2025). [Closed-loop modulation of remote hippocampal representations with neurofeedback](https://doi.org/10.1016/j.neuron.2024.12.023). *Neuron*, 113(6), 949-961.
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+ Ding, Z., Fahey, P.G., Papadopoulos, S., Wang, E.Y., Celii, B., Papadopoulos, C., Chang, A., Kunin, A.B., Tran, D., Fu, J. ... & Tolias, A. S. (2025). [Functional connectomics reveals general wiring rule in mouse visual cortex](https://doi.org/10.1038/s41586-025-08840-3). *Nature*, 640(8058), 459-469.
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+ Dyszkant, N., Oesterle, J., Qiu, Y., Harrer, M., Schubert, T., Gonschorek, D. & Euler, T. (2025). [Photoreceptor degeneration has heterogeneous effects on functional retinal ganglion cell types](https://doi.org/10.1113/JP287643). *The Journal of Physiology*, 603(21), 6599-6621.
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+ Huang, J.Y., Hess, M., Bajpai, A., Li, X., Hobson, L.N., Xu, A.J., Barton, S.J. and Lu, H.C.(2025). [From initial formation to developmental refinement: GABAergic inputs shape neuronal subnetworks in the primary somatosensory cortex](https://doi.org/10.1016/j.isci.2025.112104). *iScience*, 28(3).
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+ Joshi, A., Comrie, A. E., Bray, S., Mankili, A., Guidera, J. A., Nevers, R., Sun, X., Monroe, E., Kharazia, V., Ly, R., Astudillo Maya, D., Morales-Rodriguez, D., Yu, J., Kiseleva, A., Perez, V. & Frank, L. M. (2025). [Disruption of theta-timescale spiking impairs learning but spares hippocampal replay](https://doi.org/10.1101/2025.09.15.675587). *bioRxiv*.
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+ Lee, K. H., Denovellis, E. L., Ly, R., Magland, J., Soules, J., Comrie, A. E., Gramling, D. P., Guidera, J. A., Nevers, R., Adenekan, P., Brozdowski, C., Bray, S. R., Monroe, E., Bak, J. H., Coulter, M. E., Sun, X., Broyles, E., Shin, D., Chiang, S., Holobetz, C., ... Frank, L. M. (2025). [Spyglass: a data analysis framework for reproducible and shareable neuroscience research](https://elifesciences.org/reviewed-preprints/108089). *eLife*.
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+ Lees, R.M., Bianco, I.H., Campbell, R.A.A., Orlova, N., Peterka, D.S., Pichler, B., Smith, S.L., Yatsenko, D., Yu, C.H. & Packer, A.M. (2025). [Standardized measurements for monitoring and comparing multiphoton microscope systems](https://doi.org/10.1038/s41596-024-01120-w). *Nature Protocols*, 20, 2171–2208.

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