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2- A set of tutorials using the scater package to QC publicly available single-cell expression data sets
1+ # ` scater ` tutorials with open-access data
2+
3+ A set of tutorials using the scater package to QC publicly available
4+ single-cell expression data sets
5+
6+ ## Do it yourself
7+
8+ Clone this repository to access analyses of open-access single-cell
9+ expression data in R Markdown format so that you can experience the
10+ utility of ` scater ` and prepare single-cell expression datasets for
11+ your own exploration.
12+
13+ Navigate to your favourite directory and clone:
14+
15+ ```
16+ git clone https://github.com/davismcc/scater_tutorials_open_data.git
17+ ```
18+
19+ Or you can download the zipped version of the repository from this
20+ page.
21+
22+
23+ ## See what it looks like
24+
25+ Check out the results of the analyses in these HTML reports produced
26+ with R Markdown showing code and results.
27+
28+ * Analysis of
29+ [ Zeisel et al, 2015] ( http://science.sciencemag.org/content/347/6226/1138 )
30+ data can be seen [ here] ( ) . Kudos to the authors of that study who
31+ have made their data available at the
32+ [ Linnarsson Lab website] ( http://linnarssonlab.org/blobs/cortex/ ) .
33+ * More to follow...
34+
35+ Davis McCarthy, February 2016
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