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Tweak to Zeisel et al analysis
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zeisel_mouse_cortex.Rmd

Lines changed: 1 addition & 1 deletion
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@@ -658,7 +658,7 @@ slot of the SCESet object; if not the default `exprs` values will be used,
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with a warning). As with other plots in `scater` we can use phenotype data
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variables to define the colour and shape of the points.
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```{r plot-exprs-de, echo=T, eval=T, message=F, warning=F, fig.align="center", fig.width=8, fig.height=5}
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```{r plot-exprs-de, cache=FALSE, echo=T, eval=T, message=F, warning=F, fig.align="center", fig.width=8, fig.height=5}
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plotExpression(sce_zeisel_qc, rownames(de)[1:6], x = "level1class", ncol = 3,
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colour_by = "level1class") +
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theme(axis.text.x = element_text(angle = 60, hjust = 1, vjust = 1))

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