Standarlize manifest,proproject to current cookiecutter

Author: bobleesj

MANIFEST.in

@@ -1,28 +1,12 @@
-recursive-include src/diffpy *
-recursive-exclude src/diffpy *.py[co] *.so
-recursive-include docs *.rst conf.py Makefile make.bat
-
-recursive-include src/extensions/libpdffit2 *.[ch]*
-recursive-include src/extensions/pdffit2module *.[ch]*
-recursive-include src/examples *
-include AUTHORS.rst
-include diffpy.pdffit2/version.py
-include LICENSE.rst
-include README.rst
-include requirements/
-prune src/extensions/libpdffit2/tests
-global-exclude .gitattributes .gitignore .gitarchive.cfg
-global-exclude .DS_Store
-recursive-exclude * __pycache__
-recursive-exclude * *.py[co]
-
-# If including data files in the package, add them like:
-# include path/to/data_file
-
-# Avoid user content in setup.cfg to make distribution reproducible.
-exclude setup.cfg
-
-# Exclude git-tracked files spuriously added by setuptools_scm
-exclude .coveragerc
-prune devutils
-prune doc
+graft src
+graft tests
+graft requirements
+
+include AUTHORS.rst LICENSE*.rst README.rst
+
+# Exclude all bytecode files and __pycache__ directories
+global-exclude *.py[cod]  # Exclude all .pyc, .pyo, and .pyd files.
+global-exclude .DS_Store  # Exclude Mac filesystem artifacts.
+global-exclude __pycache__  # Exclude Python cache directories.
+global-exclude .git*  # Exclude git files and directories.
+global-exclude .idea  # Exclude PyCharm project settings.

pyproject.toml

@@ -1,10 +1,10 @@
 [build-system]
-requires = ["setuptools>=62.0", "setuptools-git-versioning<2"]
+requires = ["setuptools>=62.0", "setuptools-git-versioning>=2.0"]
 build-backend = "setuptools.build_meta"
 
 [project]
 name = "diffpy.pdffit2"
-dynamic=['version']
+dynamic=['version', 'dependencies']
 authors = [
   { name="Simon J.L. Billinge group", email="simon.billinge@gmail.com" },
 ]
@@ -48,6 +48,9 @@ include = ["*"]  # package names should match these glob patterns (["*"] by defa
 exclude = ["diffpy.pdffit2.tests*"]  # exclude packages matching these glob patterns (empty by default)
 namespaces = false  # to disable scanning PEP 420 namespaces (true by default)
 
+[tool.setuptools.dynamic]
+dependencies = {file = ["requirements/run.txt"]}
+
 [tool.black]
 line-length = 115
 include = '\.pyi?$'