updated readme

Author: xrotwang

README.md

@@ -314,74 +314,3 @@ There is rudimentary support for handling trees e.g.:
 
     n.trees.append("tree tree1 = (a,b,c);")
     n.trees.append("tree tree2 = (a,b,c);")
-    
-
-
-# Nexus manipulation scripts included
-
-## nexus_combine_nexus.py
-
-Combines a series of nexuses into one nexus ('combined.nex').
-
-Usage: python nexus_combine_nexus.py filename1.nex filename2.nex ... filenameN.nex
-
-## nexus_deinterleave.py
-
-Converts an interleaved nexus to a simple nexus.
-
-Usage: python nexus_deinterleave.py oldnexus.nex newnexus.nex
-
-## nexus_detranslate.py
-
-Converts a nexus tree file with 'translated' taxa labels to a detranslated form.
-
-Usage: python nexus_detranslate.py oldnexus.trees newnexus.trees
-
-## nexus_randomise.py
-
-Randomly shuffles the character states between taxa in a nexus file.
-
-Usage: python nexus_randomise.py oldnexus.nex randomised.nex
-
-## nexus_treemanip.py
-
-Provides a number of functions for manipulating trees.
-
-Usage: python nexus_treemanip.py [option] oldnexus.trees newnexus.trees
-
-Deleting trees:
-    nexus_treemanip.py -d 1 oldnexus.trees newnexus.trees   - delete tree #1
-    nexus_treemanip.py -d 1-5 oldnexus.trees newnexus.trees - delete trees #1-5
-    nexus_treemanip.py -d 1,5 oldnexus.trees newnexus.trees - delete trees #1 and #5
-    nexus_treemanip.py -d 1,4,20-30 oldnexus.trees newnexus.trees - delete trees #1, #4, #20-30
-    
-Resampling trees:
-    nexus_treemanip.py -r 10 oldnexus.trees newnexus.trees   - resample every 10th tree
-    
-Remove comments:
-    nexus_treemanip.py -c oldnexus.trees newnexus.trees
-
-Sampling N Random trees:
-    nexus_treemanip.py -n 100 oldnexus.trees newnexus.trees  - randomly sample 100 trees.
-
-
-## nexus_nexusmanip.py
-
-Provides a number of functions for manipulating nexus character files.
-
-Usage: python nexus_nexusmanip.py [option] oldnexus.nex [newnexus.nex]
-
-Count missing characters:
-    Usage: python nexus_nexusmanip.py -m oldnexus.nex
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-Remove constant characters:
-    Usage: python nexus_nexusmanip.py -c oldnexus.nex newnexus.nex
-    
-Remove the unique characters:
-    Usage: python nexus_nexusmanip.py -u oldnexus.nex newnexus.nex
-    
-
-## nexinfo.py
-
-Displays quick information about the nexus file loaded.
-