Correction of links.

Author: klust

docs/2022-CSC_and_LO/1_Intro/1_01_what_is_easybuild.md

@@ -1,8 +1,8 @@
 # What is EasyBuild?
 
-*[[back: Overview]](index.md)*
+*[[back: Course overview]](../index.md)*
 
-<p align="center"><img src="../../img/easybuild_logo_alpha.png" alt="EasyBuild logo" width="300px"/></p>
+<p align="center"><img src="../../../img/easybuild_logo_alpha.png" alt="EasyBuild logo" width="300px"/></p>
 
 **[EasyBuild](http://easybuild.io)** is a **software build and installation framework**
 that manages (scientific) software in an efficient way, without compromising on performance.
@@ -12,7 +12,7 @@ and provides a **command-line interface** to facilitate the installation and man
 ---
 
 <a href="http://geek-and-poke.com/geekandpoke/2010/5/14/how-to-become-invaluable.html">
-<img src="../../img/geek-and-poke-invaluable.png" style="float:right" width="45%"/>
+<img src="../../../img/geek-and-poke-invaluable.png" style="float:right" width="45%"/>
 </a>
 
 ## Elevator pitch
@@ -173,7 +173,7 @@ Since EasyBuild is primarily intended for installing (scientific) software on HP
 systems running some flavor of **GNU/Linux**. EasyBuild also works on *macOS*,
 but significant effort would be required to use it extensively there.
 
-<img src="../../img/Python-logo.png" style="border-right: 20px solid white;border-top: 5px solid white; float:left" width="90px"/>
+<img src="../../../img/Python-logo.png" style="border-right: 20px solid white;border-top: 5px solid white; float:left" width="90px"/>
 
 EasyBuild is implemented in [**Python**](https://www.python.org), and is compatible with Python 2.7 and 3.5+.
 Since [Python 2 is no longer maintained](https://blog.python.org/2020/04/python-2718-last-release-of-python-2.html),
@@ -189,7 +189,7 @@ On LUMI Lmod is used as the module tool.
 
 ## Development
 
-<a href="http://github.com/easybuilders"><img src="../../img/github_logo.png" style="float:left" width="15%"/></a>
+<a href="http://github.com/easybuilders"><img src="../../../img/github_logo.png" style="float:left" width="15%"/></a>
 EasyBuild is **actively developed** by a worldwide community under the
 [**GPLv2 open source license**](https://www.gnu.org/licenses/old-licenses/gpl-2.0.html)
 via the [**``easybuilders``** organisation on GitHub](https://github.com/easybuilders), in the following repositories:
@@ -227,26 +227,26 @@ sites leverage it, and integrate it with other tools like [Jenkins](https://www.
 
 HPC sites, consortia, and companies that use EasyBuild include (but are not limited to):
 
-<a href="https://vscentrum.be"><img src="../../img/vsc_logo.png" alt="VSC logo" width="40%"></a>
-<a href="https://www.fz-juelich.de/ias/jsc"><img src="../../img/jsc_logo.png" alt="JSC logo" width="28%"></a>
-<a href="https://hpcnow.com/"><img src="../../img/hpcnow_logo.png" alt="HPCNow! logo" width="25%"></a>
-<a href="https://www.fredhutch.org/"><img src="../../img/fredhutch_logo.png" alt="Fred Hutch logo" width="22%"></a>
-<a href="https://www.viennabiocenter.org/"><img src="../../img/vienna_biocenter_logo.png" alt="Vienna BioCenter logo" width="23%"></a>
-<a href="http://www.ceci-hpc.be/"><img src="../../img/ceci_logo.png" alt="CÉCI logo" width="18%"></a>
-<a href="https://www.computecanada.ca/home/"><img src="../../img/computecanada_logo.png" alt="Compute Canada logo" width="32%"></a>
-<a href="https://www.uio.no/english/services/it/research/hpc/"><img src="../../img/uio_logo.png" alt="UiO logo" width="25%"></a>
-<a href="https://intranet.birmingham.ac.uk/bear"><img src="../../img/bear_logo.png" alt="BEAR logo" width="20%"></a>
-<a href="https://www.snic.se/"><img src="../../img/snic_logo.png" alt="SNIC logo" width="25%"></a>
-<a href="https://nusit.nus.edu.sg/hpc/"><img src="../../img/nus_logo.png" alt="National University of Singapore logo" width="25%"></a>
-<a href="https://www.it4i.cz/en"><img src="../../img/it4innovations_logo.png" alt="IT4Innovations logo" width="20%"></a>
-<a href="https://hprc.tamu.edu/"><img src="../../img/texas_am_logo.png" alt="Texas A&M logo" width="14%"></a>
-<a href="https://tu-dresden.de/zih/dienste/service-katalog/hpc?set_language=en"><img src="../../img/tudresden_logo.png" alt="TU Dresden logo" width="28%"></a>
-<a href="https://dashboard.hpc.unimelb.edu.au/"><img src="../../img/univ_melbourne_logo.png" alt="University of Melbourne logo" width="16%"></a>
-<a href="https://hpc.uni.lu/"><img src="../../img/unilu_logo.png" alt="University of Luxembourg logo" width="18%"></a>
-<a href="https://www.epcc.ed.ac.uk/"><img src="../../img/epcc_logo.png" alt="EPCC logo" width="21%"></a>
-<a href="http://hpcf.cyi.ac.cy/"><img src="../../img/cyi_logo.png" alt="Cyprus Institute logo" width="26%"></a>
-<a href="https://scicore.unibas.ch/"><img src="../../img/basel_logo.png" alt="University of Basel logo" width="26%"></a>
-<a href="https://techcommunity.microsoft.com/t5/azure-global/running-long-hpc-jobs-on-azure-with-checkpointing-using-lammps/ba-p/1335148"><img src="../../img/microsoft_logo.png" alt="Microsoft logo" width="23%"></a>
+<a href="https://vscentrum.be"><img src="../../../img/vsc_logo.png" alt="VSC logo" width="40%"></a>
+<a href="https://www.fz-juelich.de/ias/jsc"><img src="../../../img/jsc_logo.png" alt="JSC logo" width="28%"></a>
+<a href="https://hpcnow.com/"><img src="../../../img/hpcnow_logo.png" alt="HPCNow! logo" width="25%"></a>
+<a href="https://www.fredhutch.org/"><img src="../../../img/fredhutch_logo.png" alt="Fred Hutch logo" width="22%"></a>
+<a href="https://www.viennabiocenter.org/"><img src="../../../img/vienna_biocenter_logo.png" alt="Vienna BioCenter logo" width="23%"></a>
+<a href="http://www.ceci-hpc.be/"><img src="../../../img/ceci_logo.png" alt="CÉCI logo" width="18%"></a>
+<a href="https://www.computecanada.ca/home/"><img src="../../../img/computecanada_logo.png" alt="Compute Canada logo" width="32%"></a>
+<a href="https://www.uio.no/english/services/it/research/hpc/"><img src="../../../img/uio_logo.png" alt="UiO logo" width="25%"></a>
+<a href="https://intranet.birmingham.ac.uk/bear"><img src="../../../img/bear_logo.png" alt="BEAR logo" width="20%"></a>
+<a href="https://www.snic.se/"><img src="../../../img/snic_logo.png" alt="SNIC logo" width="25%"></a>
+<a href="https://nusit.nus.edu.sg/hpc/"><img src="../../../img/nus_logo.png" alt="National University of Singapore logo" width="25%"></a>
+<a href="https://www.it4i.cz/en"><img src="../../../img/it4innovations_logo.png" alt="IT4Innovations logo" width="20%"></a>
+<a href="https://hprc.tamu.edu/"><img src="../../../img/texas_am_logo.png" alt="Texas A&M logo" width="14%"></a>
+<a href="https://tu-dresden.de/zih/dienste/service-katalog/hpc?set_language=en"><img src="../../../img/tudresden_logo.png" alt="TU Dresden logo" width="28%"></a>
+<a href="https://dashboard.hpc.unimelb.edu.au/"><img src="../../../img/univ_melbourne_logo.png" alt="University of Melbourne logo" width="16%"></a>
+<a href="https://hpc.uni.lu/"><img src="../../../img/unilu_logo.png" alt="University of Luxembourg logo" width="18%"></a>
+<a href="https://www.epcc.ed.ac.uk/"><img src="../../../img/epcc_logo.png" alt="EPCC logo" width="21%"></a>
+<a href="http://hpcf.cyi.ac.cy/"><img src="../../../img/cyi_logo.png" alt="Cyprus Institute logo" width="26%"></a>
+<a href="https://scicore.unibas.ch/"><img src="../../../img/basel_logo.png" alt="University of Basel logo" width="26%"></a>
+<a href="https://techcommunity.microsoft.com/t5/azure-global/running-long-hpc-jobs-on-azure-with-checkpointing-using-lammps/ba-p/1335148"><img src="../../../img/microsoft_logo.png" alt="Microsoft logo" width="23%"></a>
 
 ---
 
@@ -262,7 +262,7 @@ The [search box](https://docs.easybuild.io/en/latest/search.html) on the top lef
 
 ### GitHub
 
-<a href="http://github.com/easybuilders"><img src="../../img/github_logo.png" style="float:left" width="15%"/></a>
+<a href="http://github.com/easybuilders"><img src="../../../img/github_logo.png" style="float:left" width="15%"/></a>
 
 You can open an issue in one of the EasyBuild repositories in [the `easybuilders` GitHub organisation](https://github.com/easybuilders/) to
 ask questions, report problems or share suggestions and ideas for additional
@@ -289,7 +289,7 @@ to the EasyBuild Slack channel.
 
 ### Slack
 
-<img src="../../img/slack_logo.png" alt="Slack logo" style="float:left" width="22%"/>
+<img src="../../../img/slack_logo.png" alt="Slack logo" style="float:left" width="22%"/>
 
 The [EasyBuild Slack](https://easybuild.slack.com/) is a quick and easy way
 to get in touch with the EasyBuild community.

docs/2022-CSC_and_LO/2_Using/2_01_troubleshooting.md

@@ -1,6 +1,6 @@
 # Troubleshooting
 
-*[[back: BAsic usage]](../1_Intro/1_08_basic_usage)*
+*[[back: Basic usage]](../1_Intro/1_08_basic_usage.md)*
 
 ---
 

docs/2022-CSC_and_LO/2_Using/2_02_creating_easyconfig_files.md

@@ -1,6 +1,6 @@
 # Creating easyconfig files
 
-*[[back: Troubleshooting]](2_02_troubleshooting)*
+*[[back: Troubleshooting]](2_01_troubleshooting.md)*
 
 ---
 
@@ -1024,4 +1024,4 @@ You can leverage the `eb-tutorial` easyconfig file we have composed in the examp
 
 ---
 
-*[[next: Using external modules from the Cray PE]](2_03_external_modules)*
+*[[next: Using external modules from the Cray PE]](2_03_external_modules.md)*

docs/2022-CSC_and_LO/2_Using/2_03_external_modules.md

@@ -1,6 +1,6 @@
 # Using external modules from the Cray PE
 
-*[[back: Creating easyconfig files]](2_02_creating_easyconfig_files)*
+*[[back: Creating easyconfig files]](2_02_creating_easyconfig_files.md)*
 
 ---
 

docs/2022-CSC_and_LO/3_Advanced/3_03_slurm_jobs.md

@@ -330,4 +330,4 @@ $ module avail AUGUSTUS
 
 ---
 
-*[[next: Module naming schemes]](3_04_module_naming_scheme)*
+*[[next: Module naming schemes]](3_04_module_naming_schemes.md)*

docs/2022-CSC_and_LO/3_Advanced/3_04_module_naming_schemes.md

@@ -55,7 +55,7 @@ This typical Lmod hierarcny would map very well on the EasyBuild common toolchai
 
 In fact, for the example
 
-<div align="center"><img src="../img/hmns.png" width="60%"/></div>
+<div align="center"><img src="../../../img/hmns.png" width="60%"/></div>
 
 software at the ``Core`` level would be installed with the ``GCCcore`` and ``SYSTEM``
 toolchains. Software at the ``Compiler`` level would be installed with the ``GCC``

docs/2022-CSC_and_LO/3_Advanced/3_05_github_integration.md

@@ -72,7 +72,7 @@ git push my_fork example
 * the changes are indeed the ones you want to propose;
 * clicking the (correct) green button;
 
-<div align="center"><img src="../../img/pfft.png" alt="Pfft" width="30%"/></div>
+<div align="center"><img src="../../../img/pfft.png" alt="Pfft" width="30%"/></div>
 
 That didn't exactly motivate you to contribute, did it...
 
@@ -82,7 +82,7 @@ Over the years we noticed that some people were keen on contributing to EasyBuil
 but they were not very familiar with Git or GitHub. That meant they had to overcome a
 relatively steep learning curve before they could contribute...
 
-<div align="center"><img src="../../img/no_git.png" alt="Gandalf vs Git" width="50%"/></div>
+<div align="center"><img src="../../../img/no_git.png" alt="Gandalf vs Git" width="50%"/></div>
 
 In addition, the contribution workflow can be a bit daunting and time consuming,
 even if you're already familiar with the procedure. You will have dozens of
@@ -449,11 +449,11 @@ Note that we may need to use `--rebuild` here since `eb-tutorial` may already be
 
 This results in a comment being added to the pull request:
 
-<div align="center"><img src="../../img/test_report_comment.png" alt="Test report comment" width="75%"/></div>
+<div align="center"><img src="../../../img/test_report_comment.png" alt="Test report comment" width="75%"/></div>
 
 The gist linked from this comment provides more detailed information:
 
-<div align="center"><img src="../../img/test_report_gist.png" alt="Test report gist" width="75%"/></div>
+<div align="center"><img src="../../../img/test_report_gist.png" alt="Test report gist" width="75%"/></div>
 
 ---
 

docs/2022-CSC_and_LO/3_Advanced/index.md

@@ -8,8 +8,8 @@ LUMI ``EasyBuild-user`` module. Hooks are used on LUMI, but it is not really adv
 overwrite the centrally defined hooks with a local file. And the whole structure of the 
 EasyBuild integration is also set up to make use of the GitHub integration in the future.
 
-* [Using EasyBuild as a library](3_01_easybuild_library.md) *(hands-on)*
-* [Using hooks to customise EasyBuild](3_02_hooks.md) *(hands-on)*
-* [Submitting installations as Slurm jobs](3_03_slurm_jobs.md) *(hands-on)*
-* [Module naming schemes (incl. hierarchical)](3_04_module_naming_schemes.md) *(hands-on)*
-* [GitHub integration to facilitate contributing to EasyBuild](3_05_github_integration.md) *(hands-on)*
+* [Using EasyBuild as a library](3_01_easybuild_library.md)
+* [Using hooks to customise EasyBuild](3_02_hooks.md)
+* [Submitting installations as Slurm jobs](3_03_slurm_jobs.md)
+* [Module naming schemes (incl. hierarchical)](3_04_module_naming_schemes.md)
+* [GitHub integration to facilitate contributing to EasyBuild](3_05_github_integration.md)

mkdocs.yml

@@ -77,31 +77,30 @@ nav:
       - "CSC (spring '22)":
           - (overview): 2022-CSC_and_LO/index.md
           - Introduction to EasyBuild:
-              - (overview): 2022-CSC_and_LO/1_00_part1_intro.md
-              - What is EasyBuild?: 2022-CSC_and_LO/1_01_what_is_easybuild.md
-              - The Lmod module system: 2022-CSC_and_LO/1_02_Lmod.md
-              - The HPE Cray Programming Environment: 2022-CSC_and_LO/1_03_CPE.md
-              - LUMI software stacks: 2022-CSC_and_LO/1_04_LUMI_software_stack.md
-              - Terminology: 2022-CSC_and_LO/1_05_terminology.md
-              - Installation: 2022-CSC_and_LO/1_06_installation.md
-              - Configuration: 2022-CSC_and_LO/1_07_configuration.md
-              - Basic usage: 2022-CSC_and_LO/1_08_basic_usage.md
+              - (overview): 2022-CSC_and_LO/1_Intro/index.md
+              - What is EasyBuild?: 2022-CSC_and_LO/1_Intro/1_01_what_is_easybuild.md
+              - The Lmod module system: 2022-CSC_and_LO/1_Intro/1_02_Lmod.md
+              - The HPE Cray Programming Environment: 2022-CSC_and_LO/1_Intro/1_03_CPE.md
+              - LUMI software stacks: 2022-CSC_and_LO/1_Intro/1_04_LUMI_software_stack.md
+              - Terminology: 2022-CSC_and_LO/1_Intro/1_05_terminology.md
+              - Installation: 2022-CSC_and_LO/1_Intro/1_06_installation.md
+              - Configuration: 2022-CSC_and_LO/1_Intro/1_07_configuration.md
+              - Basic usage: 2022-CSC_and_LO/1_Intro/1_08_basic_usage.md
           - Using EasyBuild:
-              - (overview): 2022-CSC_and_LO/2_00_part2_using.md
-              - Troubleshooting: 2022-CSC_and_LO/2_01_troubleshooting.md
-              - Creating easyconfig files: 2022-CSC_and_LO/2_02_creating_easyconfig_files.md
-              - Using external modules from the Cray PE: 2022-CSC_and_LO/2_03_external_modules.md
-              - Implementing easyblocks: 2022-CSC_and_LO/2_04_implementing_easyblocks.md
+              - (overview): 2022-CSC_and_LO/2_Using/index.md
+              - Troubleshooting: 2022-CSC_and_LO/2_Using/2_01_troubleshooting.md
+              - Creating easyconfig files: 2022-CSC_and_LO/2_Using/2_02_creating_easyconfig_files.md
+              - Using external modules from the Cray PE: 2022-CSC_and_LO/2_Using/2_03_external_modules.md
+              - Implementing easyblocks: 2022-CSC_and_LO/2_Using/2_04_implementing_easyblocks.md
           - Advanced topics:
-              - (overview): 2022-CSC_and_LO/3_00_part3_advanced.md
-              - Using EasyBuild as a library: 2022-CSC_and_LO/3_01_easybuild_library.md
-              - Using hooks to customise EasyBuild: 2022-CSC_and_LO/3_02_hooks.md
-              - Submitting installations as Slurm jobs: 2022-CSC_and_LO/3_03_slurm_jobs.md
-              - Module naming schemes (incl. hierarchical): 2022-CSC_and_LO/3_04_module_naming_schemes.md
-              - GitHub integration to facilitate contributing to EasyBuild: 2022-CSC_and_LO/3_05_github_integration.md
+              - (overview): 2022-CSC_and_LO/3_Advanced/index.md
+              - Using EasyBuild as a library: 2022-CSC_and_LO/3_Advanced/3_01_easybuild_library.md
+              - Using hooks to customise EasyBuild: 2022-CSC_and_LO/3_Advanced/3_02_hooks.md
+              - Submitting installations as Slurm jobs: 2022-CSC_and_LO/3_Advanced/3_03_slurm_jobs.md
+              - Module naming schemes (incl. hierarchical): 2022-CSC_and_LO/3_Advanced/3_04_module_naming_schemes.md
+              - GitHub integration to facilitate contributing to EasyBuild: 2022-CSC_and_LO/3_Advanced/3_05_github_integration.md
           - Additional reading: 2022-CSC_and_LO/4_00_additional_reading.md
 
-
 plugins:
   # show revision date at bottom of each page
   - git-revision-date-localized